Search Results - "Alinejad‐Rokny, Hamid"

A hardware-efficient on-implant spike compression processor based on VQ-DAE for brain-implantable microsystems.

Authors: Ahmadi-Dastgerdi, Nazanin Hosseini-Nejad, Hossein Alinejad-Rokny, Hamid

Source: Medical & Biological Engineering & Computing; Jul2025, Vol. 63 Issue 7, p2047-2056, 10p

MethEvo: an accurate evolutionary information-based methylation site predictor.

Authors: Islam, Sadia Mugdha, Shafayat Bin Shabbir Dipta, Shubhashis Roy et al.

Source: Neural Computing & Applications; Jan2024, Vol. 36 Issue 1, p201-212, 12p

A novel uncertainty-aware deep learning technique with an application on skin cancer diagnosis.

Authors: Shamsi, Afshar Asgharnezhad, Hamzeh Bouchani, Ziba et al.

Source: Neural Computing & Applications; Oct2023, Vol. 35 Issue 30, p22179-22188, 10p

Enhancing Monte Carlo Dropout performance for uncertainty quantification.

Authors: Asgharnezhad, Hamzeh Shamsi, Afshar Alizadehsani, Roohallah et al.

Source: Neural Computing & Applications; Jun2026, Vol. 38 Issue 11, p1-19, 19p

HiST: Histological Images Reconstruct Tumor Spatial Transcriptomics via MultiScale Fusion Deep Learning.

Authors: Li, Wei Zhang, Dong Peng, Eryu et al.

Source: Advanced Science; 3/3/2026, Vol. 13 Issue 13, p1-17, 17p

CLinNET: An Interpretable and Uncertainty‐Aware Deep Learning Framework for Multi‐Modal Clinical Genomics.

Authors: Bakhshayeshi, Ivan Hosseini, Mohammad Mahdi Argha, Ahmadreza et al.

Source: Advanced Science; 2/27/2026, Vol. 13 Issue 12, p1-16, 16p

MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

Authors: Alinejad-Rokny, Hamid Ghavami Modegh, Rassa Rabiee, Hamid R. et al.

Source: PLoS Computational Biology. 6/24/2022, Vol. 18 Issue 6, p1-26. 26p. 2 Charts, 5 Graphs.

The low abundance of CpG in the SARS-CoV-2 genome is not an evolutionarily signature of ZAP.

Authors: Afrasiabi, Ali Alinejad-Rokny, Hamid Khosh, Azad et al.

Source: Scientific Reports. 2/14/2022, Vol. 12 Issue 1, p1-8. 8p.

Consensus function based on cluster-wise two level clustering.

Authors: Mahmoudi, Mohammad Reza Akbarzadeh, Hamidreza Parvin, Hamid et al.

Source: Artificial Intelligence Review; 2021, Vol. 54 Issue 1, p639-665, 27p

Unveiling Multi‐Scale Architectural Features in Single‐Cell Hi‐C Data Using scCAFE.

Authors: Wang, Fuzhou Lin, Jiecong Alinejad‐Rokny, Hamid et al.

Source: Advanced Science; 6/20/2025, Vol. 12 Issue 23, p1-15, 15p

PLXDC1+ Tumor‐Associated Pancreatic Stellate Cells Promote Desmoplastic and Immunosuppressive Niche in Pancreatic Ductal Adenocarcinoma.

Authors: Du, Yanhua Zhao, Yizhou Li, Judong et al.

Source: Advanced Science; 5/15/2025, Vol. 12 Issue 18, p1-17, 17p

Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

Authors: Alinejad-Rokny, Hamid Ghavami Modegh, Rassa Rabiee, Hamid R. et al.

Source: PLoS Computational Biology. 9/9/2022, Vol. 18 Issue 9, p1-1. 1p.

User and item profile expansion for dealing with cold start problem.

Authors: Bahrani, Payam Minaei-Bidgoli, Behrouz Parvin, Hamid et al.

Source: Journal of Intelligent & Fuzzy Systems; 2020, Vol. 38 Issue 4, p4471-4483, 13p

An Ensemble of Locally Reliable Cluster Solutions.

Authors: Niu, Huan Khozouie, Nasim Parvin, Hamid et al.

Source: Applied Sciences (2076-3417); 3/1/2020, Vol. 10 Issue 5, p1891, 20p

Diagnostic Performance of Artificial Intelligence–Based Methods for Tuberculosis Detection: Systematic Review.

Authors: Hansun, Seng Argha, Ahmadreza Bakhshayeshi, Ivan et al.

Source: Journal of Medical Internet Research; 2025, Vol. 27, p1-23, 23p

A Hardware-Efficient Novelty-Aware Spike Sorting Approach for Brain-Implantable Microsystems.

Authors: Ahmadi-Dastgerdi, Nazanin Hosseini-Nejad, Hossein Alinejad-Rokny, Hamid

Source: International Journal of Neural Systems; Dec2024, Vol. 34 Issue 12, p1-18, 18p

DeepGenePrior: A deep learning model for prioritizing genes affected by copy number variants.

Authors: Rahaie, Zahra Rabiee, Hamid R. Alinejad-Rokny, Hamid

Source: PLoS Computational Biology. 7/24/2023, Vol. 19 Issue 7, p1-31. 31p. 11 Charts, 11 Graphs.

A Lightweight Framework For Chromatin Loop Detection at the Single‐Cell Level.

Authors: Wang, Fuzhou Alinejad‐Rokny, Hamid Lin, Jiecong et al.

Source: Advanced Science. 11/24/2023, Vol. 10 Issue 33, p1-14. 14p.

Deep learning in spatially resolved transcriptfomics: a comprehensive technical view.

Authors: Zahedi, Roxana Ghamsari, Reza Argha, Ahmadreza et al.

Source: Briefings in Bioinformatics; Mar2024, Vol. 25 Issue 2, p1-19, 19p

Empowering precision medicine: AI-driven schizophrenia diagnosis via EEG signals: A comprehensive review from 2002–2023.

Authors: Jafari, Mahboobeh Sadeghi, Delaram Shoeibi, Afshin et al.

Source: Applied Intelligence; Jan2024, Vol. 54 Issue 1, p35-79, 45p