Search Results - "Bogaerts B"

MiST: rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele calling from draft genomes.

Authors: Bogaerts B Roosens NHC Vanneste K

Source: BMC genomics [BMC Genomics] 2025 Nov 14; Vol. 26 (1), pp. 1106. Date of Electronic Publication: 2025 Nov 14.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Ten common misconceptions about Galaxy (and why they are wrong!).

Authors: Bacon, Wendi Anne Batut, Bérénice Srikakulam, Sanjay Kumar et al.

Source: PLoS Computational Biology. 2/17/2026, Vol. 22 Issue 2, p1-17. 17p.

Automatic planning and optimization of a laser radar inspection system.

Authors: Spensieri, Domenico Sandberg, Jack Åblad, Edvin et al.

Source: International Journal of Computer Integrated Manufacturing; Feb2026, Vol. 39 Issue 2, p303-317, 15p

Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens.

Authors: Palma, Federica Hennart, Melanie Jolley, Keith A. et al.

Source: PLoS Biology. 6/4/2026, Vol. 24 Issue 6, p1-18. 18p.

Impact of wet- and dry-lab workflows on genome assembly, typing and enterotoxin gene detection in whole-genome sequencing of foodborne Staphylococcus aureus.

Authors: Vingadassalon N Hennekinne JA Nia Y et al.

Source: International journal of food microbiology [Int J Food Microbiol] 2026 Jun 16; Vol. 455, pp. 111761. Date of Electronic Publication: 2026 Apr 03.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Science Publishers Country of Publication: Netherlands NLM ID: 8412849 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-3460 (Electronic) Linking ISSN: 01681605 NLM ISO Abbreviation: Int J Food Microbiol Subsets: MEDLINE

Fluoroquinolone resistance in Escherichia coli in the broiler production chain: the role of parent stock and hatchery.

Authors: Ringenier M Bogaerts B Boyen F et al.

Source: Poultry science [Poult Sci] 2026 Jun; Vol. 105 (6), pp. 106847. Date of Electronic Publication: 2026 Mar 21.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 0401150 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1525-3171 (Electronic) Linking ISSN: 00325791 NLM ISO Abbreviation: Poult Sci Subsets: MEDLINE

Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.

Authors: Winand R D'hooge E Van Uffelen A et al.

Source: BMC genomics [BMC Genomics] 2025 Aug 06; Vol. 26 (1), pp. 729. Date of Electronic Publication: 2025 Aug 06.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

A Hybrid Vision and Optimization Strategy for Accurate 3D Laser Projection Calibration.

Authors: Liu, Chuang Tong, Shaogao Liu, Tao et al.

Source: Applied Sciences (2076-3417); Feb2026, Vol. 16 Issue 4, p1733, 19p

BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.

Authors: Strepis N Dollee D Vrins D et al.

Source: BMC genomics [BMC Genomics] 2025 Jan 10; Vol. 26 (1), pp. 27. Date of Electronic Publication: 2025 Jan 10.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Simulators in Educational Robotics: A Systematic Review with Content Analysis.

Authors: Ztoupas, Evangelos Sapounidis, Theodosios Tselegkaridis, Sokratis

Source: Applied Sciences (2076-3417); Jan2026, Vol. 16 Issue 2, p653, 33p

From “skype on wheels” to embodied telepresence: a holistic approach to improving the user experience of telepresence robots.

Authors: Aguilar, Ivan A. Suomalainen, Markku LaValle, Steven M. et al.

Source: Virtual Reality; Dec2025, Vol. 29 Issue 4, p1-34, 34p

Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.

Authors: Bogaerts B Van Braekel J Van Uffelen A et al.

Source: BMC genomics [BMC Genomics] 2025 Jan 08; Vol. 26 (1), pp. 20. Date of Electronic Publication: 2025 Jan 08.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Gut microbiota diversity is altered in a sex-dependent manner in Shank3B heterozygote mice.

Authors: Turner, Finley Williams, Mykle Gregoretti, Sophie et al.

Source: Frontiers in Microbiomes. 2025, p1-9. 9p.

A WGS workflow for identifying genetically modified and foodborne-pathogenic Bacillus isolates.

Authors: Godfroid M Van Uffelen A Fraiture MA et al.

Source: Food chemistry. Molecular sciences [Food Chem (Oxf)] 2025 Dec 08; Vol. 12, pp. 100338. Date of Electronic Publication: 2025 Dec 08 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 9918367084406676 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-5662 (Electronic) Linking ISSN: 26665662 NLM ISO Abbreviation: Food Chem (Oxf) Subsets: PubMed not MEDLINE

Genomic characterisation of extensively drug-resistant Acinetobacter baumannii isolates from a tertiary hospital in Ghana.

Authors: Ashley-Agbedor, Isabella E. Mahazu, Samiratu Kotey, Fleischer C. N. et al.

Source: PLoS ONE. 3/17/2026, Vol. 21 Issue 3, p1-14. 14p.

Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errors.

Authors: Bogaerts B Maex M Commans F et al.

Source: Journal of clinical microbiology [J Clin Microbiol] 2025 Oct 08; Vol. 63 (10), pp. e0041025. Date of Electronic Publication: 2025 Aug 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7505564 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-660X (Electronic) Linking ISSN: 00951137 NLM ISO Abbreviation: J Clin Microbiol Subsets: MEDLINE

Mapping the spread of fluoroquinolone resistance: continued presence of non-susceptible Escherichia coli in broilers.

Authors: Ringenier M Boyen F Bogaerts B et al.

Source: Frontiers in veterinary science [Front Vet Sci] 2025 Sep 19; Vol. 12, pp. 1610997. Date of Electronic Publication: 2025 Sep 19 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 101666658 Publication Model: eCollection Cited Medium: Print ISSN: 2297-1769 (Print) Linking ISSN: 22971769 NLM ISO Abbreviation: Front Vet Sci Subsets: PubMed not MEDLINE

Whole-genome sequencing of soil- and foodborne Bacillus cereus sensu lato indicates no clear association between their virulence repertoire, genomic diversity and food matrix.

Authors: Jacobs B Bogaerts B Verhaegen M et al.

Source: International journal of food microbiology [Int J Food Microbiol] 2025 Aug 02; Vol. 439, pp. 111266. Date of Electronic Publication: 2025 May 14.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Science Publishers Country of Publication: Netherlands NLM ID: 8412849 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-3460 (Electronic) Linking ISSN: 01681605 NLM ISO Abbreviation: Int J Food Microbiol Subsets: MEDLINE

Genomic characteristics, antimicrobial resistance profiles and virulence factors of Gallibacterium anatis isolates from layer chickens in Northern China.

Authors: Guo, Fangfang Wang, Dan Wu, Hao et al.

Source: BMC Microbiology. 11/3/2025, Vol. 25 Issue 1, p1-13. 13p.

Assessing the value of decentralized and interoperable data storage for service providers.

Authors: Verstraete, Melanie D'Hauwers, Ruben Mildt, Maarten de et al.

Source: Information Systems & e-Business Management; Jun2025, Vol. 23 Issue 2, p467-488, 22p