Search Results - "Canzar S"

Optimal marker genes for c-separated cell types with SepSolve.

Authors: Borozan B Prusina T Borozan L et al.

Source: Genome research [Genome Res] 2025 Dec 03; Vol. 35 (12), pp. 2770-2780. Date of Electronic Publication: 2025 Dec 03.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

Complete sequencing of ape genomes.

Authors: Yoo D Rhie A Hebbar P et al.

Source: Nature [Nature] 2025 May; Vol. 641 (8062), pp. 401-418. Date of Electronic Publication: 2025 Apr 09.

Publication Type: Journal Article; Comparative Study; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Counting pseudoalignments to novel splicing events.

Authors: Borozan L Rojas Ringeling F Kao SY et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jul 01; Vol. 39 (7).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Complete sequencing of ape genomes.

Authors: Yoo D Rhie A Hebbar P et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 05. Date of Electronic Publication: 2024 Oct 05.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

BiCoN: network-constrained biclustering of patients and omics data.

Authors: Lazareva O Canzar S Yuan K et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Aug 25; Vol. 37 (16), pp. 2398-2404.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE; PubMed not MEDLINE

McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data.

Authors: Alqassem I Sonthalia Y Klitzke-Feser E et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Aug 04; Vol. 37 (14), pp. 2004–2011. Date of Electronic Publication: 2021 Jan 30.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Metric multidimensional scaling for large single-cell datasets using neural networks.

Authors: Canzar S Do VH Jelić S et al.

Source: Algorithms for molecular biology : AMB [Algorithms Mol Biol] 2024 Jun 11; Vol. 19 (1), pp. 21. Date of Electronic Publication: 2024 Jun 11.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101265088 Publication Model: Electronic Cited Medium: Print ISSN: 1748-7188 (Print) Linking ISSN: 17487188 NLM ISO Abbreviation: Algorithms Mol Biol Subsets: PubMed not MEDLINE

Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy.

Authors: Iyer DP Moyon L Wittler L et al.

Source: Genome research [Genome Res] 2024 May 15; Vol. 34 (4), pp. 572-589. Date of Electronic Publication: 2024 May 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

Transcript Isoform Diversity of Y Chromosome Ampliconic Genes of Great Apes Uncovered Using Long Reads and Telomere-to-Telomere Reference Genome Assemblies.

Authors: Greshnova A Pál K Martinez JFI et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Apr 03. Date of Electronic Publication: 2024 Apr 03.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Correcting PCR amplification errors in unique molecular identifiers to generate accurate numbers of sequencing molecules.

Authors: Sun J Philpott M Loi D et al.

Source: Nature methods [Nat Methods] 2024 Mar; Vol. 21 (3), pp. 401-405. Date of Electronic Publication: 2024 Feb 05.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

A generalization of t-SNE and UMAP to single-cell multimodal omics.

Authors: Do VH Canzar S

Source: Genome biology [Genome Biol] 2021 May 03; Vol. 22 (1), pp. 130. Date of Electronic Publication: 2021 May 03.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Authors: Sulakhe D D'Souza M Wang S et al.

Source: Briefings in bioinformatics [Brief Bioinform] 2019 Sep 27; Vol. 20 (5), pp. 1754-1768.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

Alternative splicing regulates stochastic NLRP3 activity.

Authors: Hoss F Mueller JL Rojas Ringeling F et al.

Source: Nature communications [Nat Commun] 2019 Jul 19; Vol. 10 (1), pp. 3238. Date of Electronic Publication: 2019 Jul 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Genome wide association analysis in a mouse advanced intercross line.

Authors: Gonzales NM Seo J Hernandez Cordero AI et al.

Source: Nature communications [Nat Commun] 2018 Dec 04; Vol. 9 (1), pp. 5162. Date of Electronic Publication: 2018 Dec 04.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

CYFIP1 Dosages Exhibit Divergent Behavioral Impact via Diametric Regulation of NMDA Receptor Complex Translation in Mouse Models of Psychiatric Disorders.

Authors: Kim NS Ringeling FR Zhou Y et al.

Source: Biological psychiatry [Biol Psychiatry] 2022 Nov 15; Vol. 92 (10), pp. 815-826. Date of Electronic Publication: 2021 May 05.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 0213264 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-2402 (Electronic) Linking ISSN: 00063223 NLM ISO Abbreviation: Biol Psychiatry Subsets: MEDLINE

The function of Wtap in N⁶-adenosine methylation of mRNAs controls T cell receptor signaling and survival of T cells.

Authors: Ito-Kureha T Leoni C Borland K et al.

Source: Nature immunology [Nat Immunol] 2022 Aug; Vol. 23 (8), pp. 1208-1221. Date of Electronic Publication: 2022 Jul 25.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Inc Country of Publication: United States NLM ID: 100941354 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1529-2916 (Electronic) Linking ISSN: 15292908 NLM ISO Abbreviation: Nat Immunol Subsets: MEDLINE

Ccr4-Not complex reduces transcription efficiency in heterochromatin.

Authors: Monteagudo-Mesas P Brönner C Kohvaei P et al.

Source: Nucleic acids research [Nucleic Acids Res] 2022 Jun 10; Vol. 50 (10), pp. 5565-5576.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.

Authors: Ringeling FR Chakraborty S Vissers C et al.

Source: Nature biotechnology [Nat Biotechnol] 2022 May; Vol. 40 (5), pp. 741-750. Date of Electronic Publication: 2022 Jan 10.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

Genome-wide off-target analyses of CRISPR/Cas9-mediated T-cell receptor engineering in primary human T cells.

Authors: Kaeuferle T Stief TA Canzar S et al.

Source: Clinical & translational immunology [Clin Transl Immunology] 2022 Jan 23; Vol. 11 (1), pp. e1372. Date of Electronic Publication: 2022 Jan 23 (Print Publication: 2022).

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons Australia, Ltd. on behalf of Australasian Society for Immunology Inc Country of Publication: Australia NLM ID: 101638268 Publication Model: eCollection Cited Medium: Print ISSN: 2050-0068 (Print) Linking ISSN: 20500068 NLM ISO Abbreviation: Clin Transl Immunology Subsets: PubMed not MEDLINE

BASIC: BCR assembly from single cells.

Authors: Canzar S Neu KE Tang Q et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2017 Feb 01; Vol. 33 (3), pp. 425-427.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE