Search Results - "Chance MR"

Recommendations and considerations for hydroxyl radical protein footprinting-mass spectrometry.

Authors: Wecksler AT Wang L Bernstein LJ et al.

Source: Nature methods [Nat Methods] 2026 Jun; Vol. 23 (6), pp. 1089-1099. Date of Electronic Publication: 2026 May 14.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

What Does Next-Generation Mass Spectrometry Offer for Proteomics? A Comprehensive Platform Comparison.

Authors: Blasco Tavares Pereira Lopes F Schlatzer D Sudhadevi T et al.

Source: Journal of proteome research [J Proteome Res] 2026 Apr 03; Vol. 25 (4), pp. 1929-1940. Date of Electronic Publication: 2026 Mar 25.

Publication Type: Journal Article; Comparative Study

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

Hydroxyl radical footprinting modification reveals an intradomain communication pathway in EFL1 disrupted by a Shwachman-Diamond syndrome-associated mutation.

Authors: Zúñiga-Domínguez JA Jain R González-Andrade M et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2026 Apr; Vol. 35 (4), pp. e70504.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

scProfiterole: Clustering of Single-Cell Proteomic Data Using Graph Contrastive Learning via Spectral Filters.

Authors: Coşkun M Lopes FB Tolunay PK et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Mar 10. Date of Electronic Publication: 2026 Mar 10.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Redox Stoichiometry at the Single-Residue Level Using Mass Spectrometry Reveals Dynamic Methionine Sulfoxide Speciation in Actin and Calmodulin during Brain Aging.

Authors: Hwang J Clore MF Blasco Tavares Pereira Lopes F et al.

Source: Journal of proteome research [J Proteome Res] 2026 Feb 06; Vol. 25 (2), pp. 765-774. Date of Electronic Publication: 2025 Dec 22.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

Human alveolar macrophages display marked hypo-responsiveness to IFN-γ in both proteomic and gene expression analysis.

Authors: Thiel BA Lundberg KC Schlatzer D et al.

Source: PloS one [PLoS One] 2024 Feb 01; Vol. 19 (2), pp. e0295312. Date of Electronic Publication: 2024 Feb 01 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Structural exposure of different microtubule binding domains determines the propagation and toxicity of pathogenic tau conformers in Alzheimer's disease.

Authors: Hromadkova L Kim C Haldiman T et al.

Source: PLoS pathogens [PLoS Pathog] 2025 Jun 13; Vol. 21 (6), pp. e1012926. Date of Electronic Publication: 2025 Jun 13 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Quantitative readout of methionine residue solvent accessibility in E. coli cells using radiolytic hydroxyl radical labeling and mass spectrometry.

Authors: Ahmed E Jain R Schlatzer D et al.

Source: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2025 May 05; Vol. 762, pp. 151745. Date of Electronic Publication: 2025 Apr 01.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 0372516 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1090-2104 (Electronic) Linking ISSN: 0006291X NLM ISO Abbreviation: Biochem Biophys Res Commun Subsets: MEDLINE

Multiplex Trifluoromethyl and Hydroxyl Radical Chemistry Enables High-Resolution Protein Footprinting.

Authors: Jain R Farquhar ER Dhillon NS et al.

Source: Analytical chemistry [Anal Chem] 2025 Jan 14; Vol. 97 (1), pp. 482-491. Date of Electronic Publication: 2024 Dec 25.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370536 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-6882 (Electronic) Linking ISSN: 00032700 NLM ISO Abbreviation: Anal Chem Subsets: MEDLINE

Functional characterization of co-phosphorylation networks.

Authors: Ayati M Yılmaz S Chance MR et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2022 Aug 02; Vol. 38 (15), pp. 3785-3793.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Exploring temporal and sex-linked dysregulation in Alzheimer disease phosphoproteome.

Authors: Yılmaz S Blasco Tavares Pereira Lopes F Schlatzer D et al.

Source: IScience [iScience] 2024 Sep 13; Vol. 27 (10), pp. 110941. Date of Electronic Publication: 2024 Sep 13 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

An engineered lactate oxidase based electrochemical sensor for continuous detection of biomarker lactic acid in human sweat and serum.

Authors: He Q Wang C Jain R et al.

Source: Heliyon [Heliyon] 2024 Jul 09; Vol. 10 (14), pp. e34301. Date of Electronic Publication: 2024 Jul 09 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101672560 Publication Model: eCollection Cited Medium: Print ISSN: 2405-8440 (Print) Linking ISSN: 24058440 NLM ISO Abbreviation: Heliyon Subsets: PubMed not MEDLINE

Making proteomics accessible: RokaiXplorer for interactive analysis of phospho-proteomic data.

Authors: Yılmaz S Blasco Tavares Pereira Lopes F Schlatzer D et al.

Source: Bioinformatics advances [Bioinform Adv] 2024 Jun 20; Vol. 4 (1), pp. vbae077. Date of Electronic Publication: 2024 Jun 20 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918282081306676 Publication Model: eCollection Cited Medium: Internet ISSN: 2635-0041 (Electronic) Linking ISSN: 26350041 NLM ISO Abbreviation: Bioinform Adv Subsets: PubMed not MEDLINE

Mass Spectrometry-Based Protein Footprinting Defines the Binding Pocket of Crotonylated H3K14 in the PHD1 Domain of BAF45D within the BAF Chromatin Remodeling Complex.

Authors: Martinez MR Kiselar J Wang B et al.

Source: ACS bio & med chem Au [ACS Bio Med Chem Au] 2024 Jun 17; Vol. 4 (4), pp. 204-213. Date of Electronic Publication: 2024 Jun 17 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 9918232604406676 Publication Model: eCollection Cited Medium: Internet ISSN: 2694-2437 (Electronic) Linking ISSN: 26942437 NLM ISO Abbreviation: ACS Bio Med Chem Au Subsets: PubMed not MEDLINE

Methionine Sulfoxide Speciation in Mouse Hippocampus Revealed by Global Proteomics Exhibits Age- and Alzheimer's Disease-Dependent Changes Targeted to Mitochondrial and Glycolytic Pathways.

Authors: Lopes FBTP Schlatzer D Li M et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2024 Jun 13; Vol. 25 (12). Date of Electronic Publication: 2024 Jun 13.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Evaluating Mass Spectrometry-Based Hydroxyl Radical Protein Footprinting of a Benchtop Flash Oxidation System against a Synchrotron X-ray Beamline.

Authors: Jain R Dhillon NS Kanchustambham VL et al.

Source: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2024 Mar 06; Vol. 35 (3), pp. 476-486. Date of Electronic Publication: 2024 Feb 09.

Publication Type: Journal Article

Journal Info: Publisher: ACS Publications Country of Publication: United States NLM ID: 9010412 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-1123 (Electronic) Linking ISSN: 10440305 NLM ISO Abbreviation: J Am Soc Mass Spectrom Subsets: MEDLINE

Structurally distinct external solvent-exposed domains drive replication of major human prions.

Authors: Siddiqi MK Kim C Haldiman T et al.

Source: PLoS pathogens [PLoS Pathog] 2021 Jun 17; Vol. 17 (6), pp. e1009642. Date of Electronic Publication: 2021 Jun 17 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer.

Authors: Ayati M Chance MR Koyutürk M

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Apr 19; Vol. 37 (2), pp. 221-228.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Robust inference of kinase activity using functional networks.

Authors: Yılmaz S Ayati M Schlatzer D et al.

Source: Nature communications [Nat Commun] 2021 Feb 19; Vol. 12 (1), pp. 1177. Date of Electronic Publication: 2021 Feb 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Military Medicine and Medical Research as a Source of Inspiration and Innovation to Solve National Security and Health Challenges in the 21st Century.

Authors: Dhillon NS Jeon N Gurkan UA et al.

Source: Pathogens & immunity [Pathog Immun] 2023 Sep 08; Vol. 8 (1), pp. 51-63. Date of Electronic Publication: 2023 Sep 08 (Print Publication: 2023).

Publication Type: Journal Article; Review

Journal Info: Publisher: Case Western Reserve University Country of Publication: United States NLM ID: 101683909 Publication Model: eCollection Cited Medium: Internet ISSN: 2469-2964 (Electronic) Linking ISSN: 24692964 NLM ISO Abbreviation: Pathog Immun Subsets: PubMed not MEDLINE