Search Results - "Coskun AF"

What is a "Good" figure: Scoring of biomedical data visualization.

Authors: Torres H Ozturk E Fang Z et al.

Source: PloS one [PLoS One] 2025 Nov 26; Vol. 20 (11), pp. e0336917. Date of Electronic Publication: 2025 Nov 26 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

An immune-competent lung-on-a-chip for modelling the human severe influenza infection response.

Authors: Ringquist R Bhatia E Chatterjee P et al.

Source: Nature biomedical engineering [Nat Biomed Eng] 2026 May; Vol. 10 (5), pp. 897-919. Date of Electronic Publication: 2025 Sep 23.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

Spatially resolved multiplex protein profiling reveals DNA methylation-dependent microenvironmental remodeling in liver fibrosis.

Authors: Li J Zhang N Sirigireddy S et al.

Source: PNAS nexus [PNAS Nexus] 2026 Feb 25; Vol. 5 (3), pp. pgag047. Date of Electronic Publication: 2026 Feb 25 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press on behalf of the National Academy of Sciences Country of Publication: England NLM ID: 9918367777906676 Publication Model: eCollection Cited Medium: Internet ISSN: 2752-6542 (Electronic) Linking ISSN: 27526542 NLM ISO Abbreviation: PNAS Nexus Subsets: PubMed not MEDLINE

Interleukin-6 restricts pre-thymic T cell lineage commitment of progenitors driving loss of SIV control.

Authors: Anwar S Naseem S Beusch CM et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Feb 02. Date of Electronic Publication: 2026 Feb 02.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Society for Immunotherapy of Cancer: Standards for Reporting of Multiplex Immunohistochemistry/Immunofluorescence Assays (STORMI).

Authors: Sater S Bifulco CB Rodriguez-Canales J et al.

Source: Journal for immunotherapy of cancer [J Immunother Cancer] 2025 Dec 21; Vol. 13 (12). Date of Electronic Publication: 2025 Dec 21.

Publication Type: Journal Article

Journal Info: Publisher: BMJ Publishing Group Ltd Country of Publication: England NLM ID: 101620585 Publication Model: Electronic Cited Medium: Internet ISSN: 2051-1426 (Electronic) Linking ISSN: 20511426 NLM ISO Abbreviation: J Immunother Cancer Subsets: MEDLINE

Untangling the fusion of spatial omics and mechanobiology.

Authors: Dembowitz S Moctezuma FGR Zhang N et al.

Source: Progress in biomedical engineering (Bristol, England) [Prog Biomed Eng (Bristol)] 2025 Dec 12; Vol. 8 (1). Date of Electronic Publication: 2025 Dec 12.

Publication Type: Journal Article; Review

Journal Info: Publisher: IOP Publishing Country of Publication: England NLM ID: 101771567 Publication Model: Electronic Cited Medium: Internet ISSN: 2516-1091 (Electronic) Linking ISSN: 25161091 NLM ISO Abbreviation: Prog Biomed Eng (Bristol) Subsets: MEDLINE

Modular, open-sourced multiplexing for democratizing spatial omics.

Authors: Zhang N Fang Z Kadakia P et al.

Source: Lab on a chip [Lab Chip] 2025 Oct 07; Vol. 25 (20), pp. 5379-5392. Date of Electronic Publication: 2025 Oct 07.

Publication Type: Journal Article

Journal Info: Publisher: Royal Society of Chemistry Country of Publication: England NLM ID: 101128948 Publication Model: Electronic Cited Medium: Internet ISSN: 1473-0189 (Electronic) Linking ISSN: 14730189 NLM ISO Abbreviation: Lab Chip Subsets: MEDLINE

Spatial morphoproteomic features predict disease states from tissue architectures.

Authors: Hu T Ozturk E Allam M et al.

Source: IScience [iScience] 2025 Jul 24; Vol. 28 (8), pp. 113204. Date of Electronic Publication: 2025 Jul 24 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

Spatially resolved subcellular protein-protein interactomics in drug-perturbed lung-cancer cultures and tissues.

Authors: Cai S Hu T Venkataraman A et al.

Source: Nature biomedical engineering [Nat Biomed Eng] 2025 Jul; Vol. 9 (7), pp. 1039-1061. Date of Electronic Publication: 2024 Oct 30.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology.

Authors: Hu T Allam M Cai S et al.

Source: Nature communications [Nat Commun] 2023 Dec 13; Vol. 14 (1), pp. 8260. Date of Electronic Publication: 2023 Dec 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Clinically relevant clot resolution via a thromboinflammation-on-a-chip.

Authors: Qiu Y Lin J Wang A et al.

Source: Nature [Nature] 2025 May; Vol. 641 (8065), pp. 1298-1308. Date of Electronic Publication: 2025 Apr 02.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Multi-niche human bone marrow on-a-chip for studying the interactions of adoptive CAR-T cell therapies with multiple myeloma.

Authors: Ghoshal D Petersen I Ringquist R et al.

Source: Biomaterials [Biomaterials] 2025 May; Vol. 316, pp. 123016. Date of Electronic Publication: 2024 Dec 15.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Science Country of Publication: Netherlands NLM ID: 8100316 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-5905 (Electronic) Linking ISSN: 01429612 NLM ISO Abbreviation: Biomaterials Subsets: MEDLINE

Graph-Based 3-Dimensional Spatial Gene Neighborhood Networks of Single Cells in Gels and Tissues.

Authors: Fang Z Krusen K Priest H et al.

Source: BME frontiers [BME Front] 2025 Mar 13; Vol. 6, pp. 0110. Date of Electronic Publication: 2025 Mar 13 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101775616 Publication Model: eCollection Cited Medium: Internet ISSN: 2765-8031 (Electronic) Linking ISSN: 27658031 NLM ISO Abbreviation: BME Front Subsets: PubMed not MEDLINE

Human immune organoids to decode B cell response in healthy donors and patients with lymphoma.

Authors: Zhong Z Quiñones-Pérez M Dai Z et al.

Source: Nature materials [Nat Mater] 2025 Feb; Vol. 24 (2), pp. 297-311. Date of Electronic Publication: 2024 Nov 06.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101155473 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4660 (Electronic) Linking ISSN: 14761122 NLM ISO Abbreviation: Nat Mater Subsets: MEDLINE

Decoding senescence of aging single cells at the nexus of biomaterials, microfluidics, and spatial omics.

Authors: Venkataraman A Kordic I Li J et al.

Source: Npj aging [NPJ Aging] 2024 Nov 26; Vol. 10 (1), pp. 57. Date of Electronic Publication: 2024 Nov 26.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 9918402285106676 Publication Model: Electronic Cited Medium: Internet ISSN: 2731-6068 (Electronic) Linking ISSN: 27316068 NLM ISO Abbreviation: NPJ Aging Subsets: PubMed not MEDLINE

High cell throughput, programmable fixation reveals the RNA and protein co-regulation with spatially resolved NFκB pseudo-signaling.

Authors: Zhang N Wang M Nambiar D et al.

Source: APL bioengineering [APL Bioeng] 2024 Nov 08; Vol. 8 (4), pp. 046108. Date of Electronic Publication: 2024 Nov 08 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: AIP Publishing Country of Publication: United States NLM ID: 101726398 Publication Model: eCollection Cited Medium: Internet ISSN: 2473-2877 (Electronic) Linking ISSN: 24732877 NLM ISO Abbreviation: APL Bioeng Subsets: PubMed not MEDLINE

Super Resolved Single-Cell Spatial Metabolomics from Multimodal Mass Spectrometry Imaging guided by Imaging Mass Cytometry.

Authors: Ozturk E Venkataraman A Rivera Moctezuma FG et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 24. Date of Electronic Publication: 2024 Oct 24.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Graph-Based Spatial Proximity of Super-Resolved Protein-Protein Interactions Predicts Cancer Drug Responses in Single Cells.

Authors: Zhang N Cai S Wang M et al.

Source: Cellular and molecular bioengineering [Cell Mol Bioeng] 2024 Oct 06; Vol. 17 (5), pp. 467-490. Date of Electronic Publication: 2024 Oct 06 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: United States NLM ID: 101468590 Publication Model: eCollection Cited Medium: Print ISSN: 1865-5025 (Print) Linking ISSN: 18655025 NLM ISO Abbreviation: Cell Mol Bioeng Subsets: PubMed not MEDLINE

Combining spatial metabolomics and proteomics profiling of single cells.

Authors: Allam M Coskun AF

Source: Nature reviews. Immunology [Nat Rev Immunol] 2024 Oct; Vol. 24 (10), pp. 701.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101124169 Publication Model: Print Cited Medium: Internet ISSN: 1474-1741 (Electronic) Linking ISSN: 14741733 NLM ISO Abbreviation: Nat Rev Immunol Subsets: MEDLINE

Spatially variant immune infiltration scoring in human cancer tissues.

Authors: Allam M Hu T Lee J et al.

Source: NPJ precision oncology [NPJ Precis Oncol] 2022 Sep 01; Vol. 6 (1), pp. 60. Date of Electronic Publication: 2022 Sep 01.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101708166 Publication Model: Electronic Cited Medium: Print ISSN: 2397-768X (Print) Linking ISSN: 2397768X NLM ISO Abbreviation: NPJ Precis Oncol Subsets: PubMed not MEDLINE