Search Results - "Eren AM"

Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case-control study.

Authors: Tabatabaei, N Eren, AM Barreiro, LB et al.

Source: BJOG: An International Journal of Obstetrics & Gynaecology. Feb2019, Vol. 126 Issue 3, p349-358. 10p. 1 Diagram, 2 Charts, 1 Graph.

Water mass specific genes dominate the Southern Ocean microbiome.

Authors: Faure E Pommellec J Noel C et al.

Source: Nature communications [Nat Commun] 2026 Mar 09; Vol. 17 (1). Date of Electronic Publication: 2026 Mar 09.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

A high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts.

Authors: Tucker SJ Füssel J Freel KC et al.

Source: Scientific data [Sci Data] 2025 Dec 04; Vol. 12 (1), pp. 1913. Date of Electronic Publication: 2025 Dec 04.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

A transfer RNA inosine modification drives genome-wide synonymous recoding across human commensal bacterial families.

Authors: Katanski CD Pathirage C Chang JC et al.

Source: PNAS nexus [PNAS Nexus] 2026 May 30; Vol. 5 (6), pp. pgag187. Date of Electronic Publication: 2026 May 30 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press on behalf of the National Academy of Sciences Country of Publication: England NLM ID: 9918367777906676 Publication Model: eCollection Cited Medium: Internet ISSN: 2752-6542 (Electronic) Linking ISSN: 27526542 NLM ISO Abbreviation: PNAS Nexus Subsets: PubMed not MEDLINE

Gifting future scientists the past through well-preserved specimens of modern microbial ecosystems.

Authors: Eren AM; Helmholtz Institute for Functional Marine Biodiversity, Oldenburg, Germany. meren@hifmb.de.; Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany. meren@hifmb.de.; Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany. meren@hifmb.de.; Marine Biological Laboratory, Woods Hole, MA, USA. meren@hifmb.de.; Max Planck Institute for Marine Microbiology, Bremen, Germany. meren@hifmb.de.

Source: Nature communications [Nat Commun] 2025 Jul 19; Vol. 16 (1), pp. 6669. Date of Electronic Publication: 2025 Jul 19.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; In Process

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress.

Authors: Veseli I Chen YT Schechter MS et al.

Source: ELife [Elife] 2025 May 16; Vol. 12. Date of Electronic Publication: 2025 May 16.

Publication Type: Journal Article

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Troubleshooting common errors in assemblies of long-read metagenomes.

Authors: Trigodet F Sachdeva R Banfield JF et al.

Source: Nature biotechnology [Nat Biotechnol] 2026 Jan 02. Date of Electronic Publication: 2026 Jan 02.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

New SAR11 isolate genomes and global marine metagenomes resolve ecologically relevant units within the Pelagibacterales.

Authors: Freel KC Tucker SJ Freel EB et al.

Source: Nature communications [Nat Commun] 2025 Dec 14; Vol. 17 (1), pp. 328. Date of Electronic Publication: 2025 Dec 14.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Defining the Mycobacterium tuberculosis Pangenome and Suggestions for a New Composite Reference Sequence.

Authors: Chitale P Ocke E Odom AR et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Nov 03. Date of Electronic Publication: 2025 Nov 03.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Digital Microbe: a genome-informed data integration framework for team science on emerging model organisms.

Authors: Veseli I DeMers MA Cooper ZS et al.

Source: Scientific data [Sci Data] 2024 Sep 04; Vol. 11 (1), pp. 967. Date of Electronic Publication: 2024 Sep 04.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Author Correction: Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration.

Authors: Little AS Younker IT Schechter MS et al.

Source: Nature microbiology [Nat Microbiol] 2025 Jun; Vol. 10 (6), pp. 1550.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE; PubMed not MEDLINE

Quantitative insights into the efficacy of genome-resolved surveys of microbial communities through ribosomal protein phylogeography and EcoPhylo.

Authors: Schechter MS Trigodet F Veseli IA et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Apr 23. Date of Electronic Publication: 2025 Apr 23.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Metabolic independence drives gut microbial colonization and resilience in health and disease.

Authors: Watson AR Füssel J Veseli I et al.

Source: Genome biology [Genome Biol] 2023 Apr 17; Vol. 24 (1), pp. 78. Date of Electronic Publication: 2023 Apr 17.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Adaptive adjustment of profile HMM significance thresholds improves functional and metabolic insights into microbial genomes.

Authors: Kananen K Veseli I Quiles Pérez CJ et al.

Source: Bioinformatics advances [Bioinform Adv] 2025 Mar 21; Vol. 5 (1), pp. vbaf039. Date of Electronic Publication: 2025 Mar 21 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918282081306676 Publication Model: eCollection Cited Medium: Internet ISSN: 2635-0041 (Electronic) Linking ISSN: 26350041 NLM ISO Abbreviation: Bioinform Adv Subsets: PubMed not MEDLINE

Habitat-specificity in SAR11 is associated with a few genes under high selection.

Authors: Tucker SJ Freel KC Eren AM et al.

Source: The ISME journal [ISME J] 2025 Jan 02; Vol. 19 (1).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE

Author Correction: A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome.

Authors: Chitale P Lemenze AD Fogarty EC et al.

Source: Nature communications [Nat Commun] 2022 Dec 07; Vol. 13 (1), pp. 7538. Date of Electronic Publication: 2022 Dec 07.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome.

Authors: Chitale P Lemenze AD Fogarty EC et al.

Source: Nature communications [Nat Commun] 2022 Nov 18; Vol. 13 (1), pp. 7068. Date of Electronic Publication: 2022 Nov 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Unifying the known and unknown microbial coding sequence space.

Authors: Vanni C Schechter MS Acinas SG et al.

Source: ELife [Elife] 2022 Mar 31; Vol. 11. Date of Electronic Publication: 2022 Mar 31.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Modern microbiology: Embracing complexity through integration across scales.

Authors: Eren AM Banfield JF

Source: Cell [Cell] 2024 Sep 19; Vol. 187 (19), pp. 5151-5170.

Publication Type: Journal Article; Review

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Bioprospecting marine microbial genomes to improve biotechnology.

Authors: Eren AM Delmont TO

Source: Nature [Nature] 2024 Sep; Vol. 633 (8029), pp. 287-288.

Publication Type: News

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE