Search Results - "Fleming SJ"

Inter-individual variation of cellular and gene-expression properties of the human striatum.

Authors: Burger S Yoo O Nemesh J et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Mar 23. Date of Electronic Publication: 2026 Mar 23.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients.

Authors: Pita-Juarez Y Karagkouni D Kalavros N et al.

Source: Genome biology [Genome Biol] 2025 Mar 14; Vol. 26 (1), pp. 56. Date of Electronic Publication: 2025 Mar 14.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

A supervised ontology-aware cell annotation method for single-cell transcriptomic data.

Authors: Magre N Alshehri E Grab F et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jan 14. Date of Electronic Publication: 2026 Jan 14.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

multiVIB: A unified probabilistic contrastive learning framework for atlas-scale integration of single-cell multi-omics data.

Authors: Xu Y Fleming SJ Wang B et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Dec 01. Date of Electronic Publication: 2025 Dec 01.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Reproducible image-based profiling with Pycytominer.

Authors: Serrano E Chandrasekaran SN Bunten D et al.

Source: Nature methods [Nat Methods] 2025 Apr; Vol. 22 (4), pp. 677-680. Date of Electronic Publication: 2025 Mar 03.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Transcriptional profile of the rat cardiovascular system at single-cell resolution.

Authors: Arduini A Fleming SJ Xiao L et al.

Source: Cell reports [Cell Rep] 2025 Jan 28; Vol. 44 (1), pp. 115091. Date of Electronic Publication: 2024 Dec 21.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Robust self-supervised denoising of voltage imaging data using CellMincer.

Authors: Wang B Ma T Chen T et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Apr 15. Date of Electronic Publication: 2024 Apr 15.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Robust self-supervised denoising of voltage imaging data using CellMincer.

Authors: Wang B Ma T Chen T et al.

Source: Npj imaging [Npj Imaging] 2024; Vol. 2 (1), pp. 51. Date of Electronic Publication: 2024 Dec 04.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: Switzerland NLM ID: 9918733285306676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2948-197X (Electronic) Linking ISSN: 2948197X NLM ISO Abbreviation: Npj Imaging Subsets: PubMed not MEDLINE

Transcriptional profile of the rat cardiovascular system at single cell resolution.

Authors: Arduini A Fleming SJ Xiao L et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Nov 16. Date of Electronic Publication: 2023 Nov 16.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender.

Authors: Fleming SJ Chaffin MD Arduini A et al.

Source: Nature methods [Nat Methods] 2023 Sep; Vol. 20 (9), pp. 1323-1335. Date of Electronic Publication: 2023 Aug 07.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Farmer Burnout in Canada.

Authors: Jones-Bitton A Hagen B Fleming SJ et al.

Source: International journal of environmental research and public health [Int J Environ Res Public Health] 2019 Dec 12; Vol. 16 (24). Date of Electronic Publication: 2019 Dec 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101238455 Publication Model: Electronic Cited Medium: Internet ISSN: 1660-4601 (Electronic) Linking ISSN: 16604601 NLM ISO Abbreviation: Int J Environ Res Public Health Subsets: MEDLINE

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients.

Authors: Pita-Juarez Y Karagkouni D Kalavros N et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2022 Oct 28. Date of Electronic Publication: 2022 Oct 28.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Single-nucleus profiling of human dilated and hypertrophic cardiomyopathy.

Authors: Chaffin M Papangeli I Simonson B et al.

Source: Nature [Nature] 2022 Aug; Vol. 608 (7921), pp. 174-180. Date of Electronic Publication: 2022 Jun 22.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Deep learning enables genetic analysis of the human thoracic aorta.

Authors: Pirruccello JP Chaffin MD Chou EL et al.

Source: Nature genetics [Nat Genet] 2022 Jan; Vol. 54 (1), pp. 40-51. Date of Electronic Publication: 2021 Nov 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

Erratum to: Assessing the reporting of categorised quantitative variables in observational epidemiological studies.

Authors: Mabikwa OV Greenwood DC Baxter PD et al.

Source: BMC health services research [BMC Health Serv Res] 2017 Apr 26; Vol. 17 (1), pp. 307. Date of Electronic Publication: 2017 Apr 26.

Publication Type: Journal Article; Published Erratum

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101088677 Publication Model: Electronic Cited Medium: Internet ISSN: 1472-6963 (Electronic) Linking ISSN: 14726963 NLM ISO Abbreviation: BMC Health Serv Res Subsets: PubMed not MEDLINE

Assessing the reporting of categorised quantitative variables in observational epidemiological studies.

Authors: Mabikwa OV Greenwood DC Baxter PD et al.

Source: BMC health services research [BMC Health Serv Res] 2017 Mar 14; Vol. 17 (1), pp. 201. Date of Electronic Publication: 2017 Mar 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101088677 Publication Model: Electronic Cited Medium: Internet ISSN: 1472-6963 (Electronic) Linking ISSN: 14726963 NLM ISO Abbreviation: BMC Health Serv Res Subsets: MEDLINE

The Intracranial Distribution of Gliomas in Relation to Exposure From Mobile Phones: Analyses From the INTERPHONE Study.

Authors: Grell K Frederiksen K Schüz J et al.

Source: American journal of epidemiology [Am J Epidemiol] 2016 Dec 01; Vol. 184 (11), pp. 818-828. Date of Electronic Publication: 2016 Nov 03.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 7910653 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-6256 (Electronic) Linking ISSN: 00029262 NLM ISO Abbreviation: Am J Epidemiol Subsets: MEDLINE

Genome-wide association study identifies multiple susceptibility loci for glioma.

Authors: Kinnersley B Labussière M Holroyd A et al.

Source: Nature communications [Nat Commun] 2015 Oct 01; Vol. 6, pp. 8559. Date of Electronic Publication: 2015 Oct 01.

Publication Type: Journal Article; Meta-Analysis; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.

Authors: Delorey TM Ziegler CGK Heimberg G et al.

Source: Nature [Nature] 2021 Jul; Vol. 595 (7865), pp. 107-113. Date of Electronic Publication: 2021 Apr 29.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.

Authors: Delorey TM Ziegler CGK Heimberg G et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2021 Feb 25. Date of Electronic Publication: 2021 Feb 25.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE