Search Results - "Gerstein MB"

DNA shape and epigenomics distinguish the mechanistic origin of human genomic structural variations.

Authors: Boev NB Gerstein MB Kumar S

Source: Nucleic acids research [Nucleic Acids Res] 2025 Nov 26; Vol. 53 (22).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Large-scale, spatially resolved panoramic CRISPR screening in native tissue environments using Perturb-DBiT.

Authors: Baysoy A Tian X Renauer P et al.

Source: Nature biotechnology [Nat Biotechnol] 2026 Jun 11. Date of Electronic Publication: 2026 Jun 11.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

College Community-Based Physical Activity Support at a Public University During the COVID-19 Pandemic: Retrospective Longitudinal Analysis of Intra- Versus Interpersonal Components for Uptake and Outcome Association.

Authors: Ash GI Mak SS Haughton AD et al.

Source: JMIR mHealth and uHealth [JMIR Mhealth Uhealth] 2025 Jun 16; Vol. 13, pp. e51707. Date of Electronic Publication: 2025 Jun 16.

Publication Type: Journal Article

Journal Info: Publisher: JMIR Publications Inc Country of Publication: Canada NLM ID: 101624439 Publication Model: Electronic Cited Medium: Internet ISSN: 2291-5222 (Electronic) Linking ISSN: 22915222 NLM ISO Abbreviation: JMIR Mhealth Uhealth Subsets: MEDLINE

Aerosol-based exposure to opportunistic pathogens originating from hospital sink drains.

Authors: Dieter L Bowie K Luhung I et al.

Source: American journal of infection control [Am J Infect Control] 2026 Mar; Vol. 54 (3), pp. 275-281. Date of Electronic Publication: 2025 Nov 04.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Mosby Country of Publication: United States NLM ID: 8004854 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1527-3296 (Electronic) Linking ISSN: 01966553 NLM ISO Abbreviation: Am J Infect Control Subsets: MEDLINE

An expanded registry of candidate cis-regulatory elements.

Authors: Moore JE Pratt HE Fan K et al.

Source: Nature [Nature] 2026 Jan 07. Date of Electronic Publication: 2026 Jan 07.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Machine-learning models based on histological images from healthy donors identify imageQTLs and predict chronological age.

Authors: Meng R Zhu W Cameron CJF et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2025 Nov 18; Vol. 122 (46), pp. e2423469122. Date of Electronic Publication: 2025 Nov 11.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

A discard-and-restart MD algorithm for the sampling of protein intermediate states.

Authors: Ianeselli A Howard J Gerstein MB

Source: Biophysical journal [Biophys J] 2025 Nov 18; Vol. 124 (22), pp. 3895-3907. Date of Electronic Publication: 2025 Mar 28.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370626 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1542-0086 (Electronic) Linking ISSN: 00063495 NLM ISO Abbreviation: Biophys J Subsets: MEDLINE

BioCoder: a benchmark for bioinformatics code generation with large language models.

Authors: Tang X Qian B Gao R et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Suppl 1), pp. i266-i276.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

MolLM: a unified language model for integrating biomedical text with 2D and 3D molecular representations.

Authors: Tang X Tran A Tan J et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Suppl 1), pp. i357-i368.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Machine Learning Models Based on Histological Images from Healthy Donors Identify ImageQTLs and Predict Chronological Age.

Authors: Meng R Zhu W Cameron CJ et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Sep 09. Date of Electronic Publication: 2025 Sep 09.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders.

Authors: Lee S McAfee JC Lee J et al.

Source: Cell [Cell] 2025 Mar 06; Vol. 188 (5), pp. 1409-1424.e21. Date of Electronic Publication: 2025 Jan 22.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

The cell-type underpinnings of the human functional cortical connectome.

Authors: Zhang XH Anderson KM Dong HM et al.

Source: Nature neuroscience [Nat Neurosci] 2025 Jan; Vol. 28 (1), pp. 150-160. Date of Electronic Publication: 2024 Nov 21.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 9809671 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1726 (Electronic) Linking ISSN: 10976256 NLM ISO Abbreviation: Nat Neurosci Subsets: MEDLINE

Building integrative functional maps of gene regulation.

Authors: Xu J Pratt HE Moore JE et al.

Source: Human molecular genetics [Hum Mol Genet] 2022 Oct 20; Vol. 31 (R1), pp. R114-R122.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: IRL Press at Oxford University Press Country of Publication: England NLM ID: 9208958 Publication Model: Print Cited Medium: Internet ISSN: 1460-2083 (Electronic) Linking ISSN: 09646906 NLM ISO Abbreviation: Hum Mol Genet Subsets: MEDLINE

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes.

Authors: Li C Bonder MJ Syed S et al.

Corporate Authors: Li C Bonder MJ Syed S et al.

Source: Genome research [Genome Res] 2024 Dec 23; Vol. 34 (12), pp. 2304-2318. Date of Electronic Publication: 2024 Dec 23.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

Improved Prediction of Ligand-Protein Binding Affinities by Meta-modeling.

Authors: Lee HJ Emani PS Gerstein MB

Source: Journal of chemical information and modeling [J Chem Inf Model] 2024 Dec 09; Vol. 64 (23), pp. 8684-8704. Date of Electronic Publication: 2024 Nov 22.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE

REliable PIcking by Consensus (REPIC): a consensus methodology for harnessing multiple cryo-EM particle pickers.

Authors: Cameron CJF Seager SJH Sigworth FJ et al.

Source: Communications biology [Commun Biol] 2024 Oct 31; Vol. 7 (1), pp. 1421. Date of Electronic Publication: 2024 Oct 31.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Leveraging a large language model to predict protein phase transition: A physical, multiscale, and interpretable approach.

Authors: Frank M Ni P Jensen M et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Aug 13; Vol. 121 (33), pp. e2320510121. Date of Electronic Publication: 2024 Aug 07.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

Establishing a Global Standard for Wearable Devices in Sport and Exercise Medicine: Perspectives from Academic and Industry Stakeholders.

Authors: Ash GI Stults-Kolehmainen M Busa MA et al.

Source: Sports medicine (Auckland, N.Z.) [Sports Med] 2021 Nov; Vol. 51 (11), pp. 2237-2250. Date of Electronic Publication: 2021 Sep 01.

Publication Type: Journal Article

Journal Info: Publisher: Adis, Springer International Country of Publication: New Zealand NLM ID: 8412297 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1179-2035 (Electronic) Linking ISSN: 01121642 NLM ISO Abbreviation: Sports Med Subsets: MEDLINE

Network propagation-based prioritization of long tail genes in 17 cancer types.

Authors: Mohsen H Gunasekharan V Qing T et al.

Source: Genome biology [Genome Biol] 2021 Oct 07; Vol. 22 (1), pp. 287. Date of Electronic Publication: 2021 Oct 07.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Latent evolutionary signatures: a general framework for analysing music and cultural evolution.

Authors: Warrell J Salichos L Gancz M et al.

Source: Journal of the Royal Society, Interface [J R Soc Interface] 2024 Mar; Vol. 21 (212), pp. 20230647. Date of Electronic Publication: 2024 Mar 20.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Royal Society Country of Publication: England NLM ID: 101217269 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1742-5662 (Electronic) Linking ISSN: 17425662 NLM ISO Abbreviation: J R Soc Interface Subsets: MEDLINE