Search Results - "Hardison RC"

Dissecting polycomb complexes for enhanced fetal hemoglobin production.

Authors: Kaminski P Min K Traxler EA et al.

Source: Blood [Blood] 2026 May 29. Date of Electronic Publication: 2026 May 29.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 7603509 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1528-0020 (Electronic) Linking ISSN: 00064971 NLM ISO Abbreviation: Blood Subsets: MEDLINE

An optimized CRISPR-Cas12a genome-wide screen reveals PTPA phosphatase pathway in fetal hemoglobin silencing.

Authors: Traxler EA Hotan Q Shao Y et al.

Source: Blood [Blood] 2026 Apr 23; Vol. 147 (17), pp. 1999-2010.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 7603509 Publication Model: Print Cited Medium: Internet ISSN: 1528-0020 (Electronic) Linking ISSN: 00064971 NLM ISO Abbreviation: Blood Subsets: MEDLINE

Dissecting polycomb complexes for enhanced fetal hemoglobin production.

Authors: Kaminski PJ Min K Traxler EA et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Apr 18. Date of Electronic Publication: 2026 Apr 18.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

A submission checklist to improve transparency and replicability of functional genomics data analyses.

Authors: Hepperla AJ Hardison RC Colbran RJ et al.

Source: The Journal of biological chemistry [J Biol Chem] 2026 Mar; Vol. 302 (3), pp. 111285.

Publication Type: Editorial

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE; In Process

Highly discriminative globin gene activation by the noncanonical BAF chromatin remodeling complex.

Authors: Bagchi A Billakanti S Shehu V et al.

Source: Blood [Blood] 2026 Feb 05; Vol. 147 (6), pp. 675-688.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 7603509 Publication Model: Print Cited Medium: Internet ISSN: 1528-0020 (Electronic) Linking ISSN: 00064971 NLM ISO Abbreviation: Blood Subsets: MEDLINE

Transcriptome and chromatin accessibility divergence during differentiation of a bipotential progenitor cell population to erythroblasts and megakaryocytes.

Authors: Mishra T Giardine BM Morrissey CS et al.

Source: The Journal of biological chemistry [J Biol Chem] 2025 Dec; Vol. 301 (12), pp. 110819. Date of Electronic Publication: 2025 Oct 14.

Publication Type: Journal Article; Research Support, N.I.H., Intramural

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE

Mechanisms of Globin Gene Regulation in Mammals.

Authors: Hardison RC; Department of Biochemistry and Molecular Biology, Center for Eukaryotic Gene Regulation, Center for Computational Biology and Bioinformatics, The Pennsylvania State University, University Park, Pennsylvania, USA; email: rch8@psu.edu.

Source: Annual review of genetics [Annu Rev Genet] 2025 Nov; Vol. 59 (1), pp. 341-367. Date of Electronic Publication: 2025 Aug 19.

Publication Type: Journal Article; Review; Research Support, N.I.H., Extramural

Journal Info: Publisher: Annual Reviews Country of Publication: United States NLM ID: 0117605 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-2948 (Electronic) Linking ISSN: 00664197 NLM ISO Abbreviation: Annu Rev Genet Subsets: MEDLINE

Single-stranded DNA-binding proteins are essential components of the architectural LDB1 protein complex.

Authors: Wang X Aboreden NG Cai Y et al.

Source: Molecular cell [Mol Cell] 2025 Aug 21; Vol. 85 (16), pp. 3074-3089.e8. Date of Electronic Publication: 2025 Aug 12.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

Divergence between transcriptomes and chromatin accessibility during differentiation from a bipotential progenitor cell population to erythroblasts and megakaryocytes.

Authors: Mishra T Giardine BM Morrissey CS et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Jul 03. Date of Electronic Publication: 2025 Jul 03.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Single-stranded DNA binding proteins are essential components of the architectural LDB1 protein complex.

Authors: Wang X Aboreden NG Cai Y et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Jun 06. Date of Electronic Publication: 2025 Jun 06.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

LDB1 establishes multi-enhancer networks to regulate gene expression.

Authors: Aboreden NG Lam JC Goel VY et al.

Source: Molecular cell [Mol Cell] 2025 Jan 16; Vol. 85 (2), pp. 376-393.e9. Date of Electronic Publication: 2024 Dec 24.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation.

Authors: Xiang G Giardine B An L et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2023 Mar 20; Vol. 24 (1), pp. 102. Date of Electronic Publication: 2023 Mar 20.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

CLIMB: High-dimensional association detection in large scale genomic data.

Authors: Koch H Keller CA Xiang G et al.

Source: Nature communications [Nat Commun] 2022 Nov 12; Vol. 13 (1), pp. 6874. Date of Electronic Publication: 2022 Nov 12.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

YY1-controlled regulatory connectivity and transcription are influenced by the cell cycle.

Authors: Lam JC Aboreden NG Midla SC et al.

Source: Nature genetics [Nat Genet] 2024 Sep; Vol. 56 (9), pp. 1938-1952. Date of Electronic Publication: 2024 Aug 29.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

LDB1 establishes multi-enhancer networks to regulate gene expression.

Authors: Aboreden NG Lam JC Goel VY et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Aug 24. Date of Electronic Publication: 2024 Aug 24.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.

Authors: Xiang G He X Giardine BM et al.

Source: Genome research [Genome Res] 2024 Aug 20; Vol. 34 (7), pp. 1089-1105. Date of Electronic Publication: 2024 Aug 20.

Publication Type: Journal Article; Research Support, N.I.H., Intramural; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.

Authors: Xiang G Giardine BM Mahony S et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Sep 29; Vol. 37 (18), pp. 3011-3013.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

CTCF and transcription influence chromatin structure re-configuration after mitosis.

Authors: Zhang H Lam J Zhang D et al.

Source: Nature communications [Nat Commun] 2021 Aug 27; Vol. 12 (1), pp. 5157. Date of Electronic Publication: 2021 Aug 27.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Genome folding principles uncovered in condensin-depleted mitotic chromosomes.

Authors: Zhao H Lin Y Lin E et al.

Source: Nature genetics [Nat Genet] 2024 Jun; Vol. 56 (6), pp. 1213-1224. Date of Electronic Publication: 2024 May 27.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.

Authors: Xiang G He X Giardine BM et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 May 17. Date of Electronic Publication: 2024 May 17.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE