Search Results - "Hitz BC"

Data navigation on the ENCODE portal.

Authors: Kagda MS Lam B Litton C et al.

Source: Nature communications [Nat Commun] 2025 Oct 30; Vol. 16 (1), pp. 9592. Date of Electronic Publication: 2025 Oct 30.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

A scalable approach to resolving variants of uncertain significance.

Authors: Tejura M Chen Y McEwen AE et al.

Corporate Authors: Tejura M Chen Y McEwen AE et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Feb 23. Date of Electronic Publication: 2026 Feb 23.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

The IGVF catalog-from genetic variation to function.

Authors: Li D Liu S Assis PR et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jan 06; Vol. 54 (D1), pp. D1437-D1445.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Improving the FAIRness and Sustainability of the NHGRI Resources Ecosystem.

Authors: Babb L Bult C Carey VJ et al.

Corporate Authors: Babb L Bult C Carey VJ et al.

Source: ArXiv [ArXiv] 2025 Aug 19. Date of Electronic Publication: 2025 Aug 19.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE

The ENCODE Uniform Analysis Pipelines.

Authors: Hitz BC Lee JW Jolanki O et al.

Source: Research square [Res Sq] 2023 Jul 19. Date of Electronic Publication: 2023 Jul 19.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.

Authors: Luo Y Hitz BC Gabdank I et al.

Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D882-D889.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.

Authors: Reese F Williams B Balderrama-Gutierrez G et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 May 16. Date of Electronic Publication: 2023 May 16.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Annotating and prioritizing human non-coding variants with RegulomeDB v.2.

Authors: Dong S Zhao N Spragins E et al.

Source: Nature genetics [Nat Genet] 2023 May; Vol. 55 (5), pp. 724-726.

Publication Type: Letter; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

The ENCODE Uniform Analysis Pipelines.

Authors: Hitz BC Jin-Wook L Jolanki O et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 06. Date of Electronic Publication: 2023 Apr 06.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models.

Authors: Rozowsky J Gao J Borsari B et al.

Source: Cell [Cell] 2023 Mar 30; Vol. 186 (7), pp. 1493-1511.e40.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

The Encyclopedia of DNA elements (ENCODE): data portal update.

Authors: Davis CA Hitz BC Sloan CA et al.

Source: Nucleic acids research [Nucleic Acids Res] 2018 Jan 04; Vol. 46 (D1), pp. D794-D801.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res

Prevention of data duplication for high throughput sequencing repositories.

Authors: Gabdank I Chan ET Davidson JM et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2018 Jan 01; Vol. 2018.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

Author Correction: Perspectives on ENCODE.

Authors: Snyder MP Gingeras TR Moore JE et al.

Corporate Authors: Snyder MP Gingeras TR Moore JE et al.

Source: Nature [Nature] 2022 May; Vol. 605 (7909), pp. E4.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.

Authors: Hitz BC Rowe LD Podduturi NR et al.

Source: PloS one [PLoS One] 2017 Apr 12; Vol. 12 (4), pp. e0175310. Date of Electronic Publication: 2017 Apr 12 (Print Publication: 2017).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.

Authors: Song G Balakrishnan R Binkley G et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2016 Jun 01; Vol. 2016. Date of Electronic Publication: 2016 Jun 01 (Print Publication: 2016).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

Principles of metadata organization at the ENCODE data coordination center.

Authors: Hong EL Sloan CA Chan ET et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2016 Mar 15; Vol. 2016. Date of Electronic Publication: 2016 Mar 15 (Print Publication: 2016).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

ENCODE data at the ENCODE portal.

Authors: Sloan CA Chan ET Davidson JM et al.

Source: Nucleic acids research [Nucleic Acids Res] 2016 Jan 04; Vol. 44 (D1), pp. D726-32. Date of Electronic Publication: 2015 Nov 02.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The Saccharomyces Genome Database Variant Viewer.

Authors: Sheppard TK Hitz BC Engel SR et al.

Source: Nucleic acids research [Nucleic Acids Res] 2016 Jan 04; Vol. 44 (D1), pp. D698-702. Date of Electronic Publication: 2015 Nov 17.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Perspectives on ENCODE.

Authors: Snyder MP Gingeras TR Moore JE et al.

Corporate Authors: Snyder MP Gingeras TR Moore JE et al.

Source: Nature [Nature] 2020 Jul; Vol. 583 (7818), pp. 693-698. Date of Electronic Publication: 2020 Jul 29.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Ontology application and use at the ENCODE DCC.

Authors: Malladi VS Erickson DT Podduturi NR et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2015 Mar 16; Vol. 2015. Date of Electronic Publication: 2015 Mar 16 (Print Publication: 2015).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Review

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE