Search Results - "Huynen MA"

KG-bench: benchmarking graph neural network algorithms for drug repurposing.

Authors: Wei S Sasi C Piepenbrock J et al.

Corporate Authors: Wei S Sasi C Piepenbrock J et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 May 03; Vol. 42 (5).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments.

Authors: Hilali SE Dru P Le Moan A et al.

Source: BMC biology [BMC Biol] 2025 Sep 02; Vol. 23 (1), pp. 274. Date of Electronic Publication: 2025 Sep 02.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

Exome variant prioritization in a large cohort of hearing-impaired individuals indicates IKZF2 to be associated with non-syndromic hearing loss and guides future research of unsolved cases.

Authors: Velde HM Vaseghi-Shanjani M Smits JJ et al.

Corporate Authors: Velde HM Vaseghi-Shanjani M Smits JJ et al.

Source: Human genetics [Hum Genet] 2024 Nov; Vol. 143 (11), pp. 1379-1399. Date of Electronic Publication: 2024 Oct 16.

Publication Type: Journal Article

Journal Info: Publisher: Springer Verlag Country of Publication: Germany NLM ID: 7613873 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1203 (Electronic) Linking ISSN: 03406717 NLM ISO Abbreviation: Hum Genet Subsets: MEDLINE

A recurrent adaptive mutation in the transmembrane 2B protein of an insect picorna-like virus in a nonnative host.

Authors: Lezcano OM Fuhrmann L Bos RT et al.

Source: Journal of virology [J Virol] 2026 Jan 20; Vol. 100 (1), pp. e0123925. Date of Electronic Publication: 2025 Dec 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Society For Microbiology Country of Publication: United States NLM ID: 0113724 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5514 (Electronic) Linking ISSN: 0022538X NLM ISO Abbreviation: J Virol Subsets: MEDLINE

Functional characterization of a human epilepsy-associated gene network reveals metabolic regulation as a critical factor underlying seizure susceptibilities.

Authors: Long J Jones SG Serna A et al.

Source: Disease models & mechanisms [Dis Model Mech] 2026 Jan 01; Vol. 19 (1). Date of Electronic Publication: 2026 Jan 28.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Company of Biologists Ltd Country of Publication: England NLM ID: 101483332 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1754-8411 (Electronic) Linking ISSN: 17548403 NLM ISO Abbreviation: Dis Model Mech Subsets: MEDLINE

Temporal composition of the cervicovaginal microbiome associates with hrHPV infection outcomes in a longitudinal study.

Authors: Molina MA Leenders WPJ Huynen MA et al.

Source: BMC infectious diseases [BMC Infect Dis] 2024 Jun 03; Vol. 24 (1), pp. 552. Date of Electronic Publication: 2024 Jun 03.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100968551 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2334 (Electronic) Linking ISSN: 14712334 NLM ISO Abbreviation: BMC Infect Dis Subsets: MEDLINE

The use of knowledge graphs for drug repurposing: From classical machine learning algorithms to graph neural networks.

Authors: Wei S Sasi C Piepenbrock J et al.

Source: Computers in biology and medicine [Comput Biol Med] 2025 Sep; Vol. 196 (Pt C), pp. 110873. Date of Electronic Publication: 2025 Aug 09.

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

Mesenchymal stem cells suppress NF-κB and ERK signalling while enhancing chemotaxis in CD4⁺ T cells.

Authors: Sengun E Fröberg J He X et al.

Source: Scientific reports [Sci Rep] 2025 Aug 30; Vol. 15 (1), pp. 32000. Date of Electronic Publication: 2025 Aug 30.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Antiviral responses induced by Tdap-IPV vaccination are associated with persistent humoral immunity to Bordetella pertussis.

Authors: Gillard J Suffiotti M Brazda P et al.

Source: Nature communications [Nat Commun] 2024 Mar 08; Vol. 15 (1), pp. 2133. Date of Electronic Publication: 2024 Mar 08.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Primary Exposure to SARS-CoV-2 via Infection or Vaccination Determines Mucosal Antibody-Dependent ACE2 Binding Inhibition.

Authors: Fröberg J Koomen VJCH van der Gaast-de Jongh CE et al.

Source: The Journal of infectious diseases [J Infect Dis] 2024 Jan 12; Vol. 229 (1), pp. 137-146.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0413675 Publication Model: Print Cited Medium: Internet ISSN: 1537-6613 (Electronic) Linking ISSN: 00221899 NLM ISO Abbreviation: J Infect Dis Subsets: MEDLINE

Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution.

Authors: van Strien J Evers F Lutikurti M et al.

Source: PLoS computational biology [PLoS Comput Biol] 2023 Aug 07; Vol. 19 (8), pp. e1011090. Date of Electronic Publication: 2023 Aug 07 (Print Publication: 2023).

Publication Type: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Ndufs4 knockout mice with isolated complex I deficiency engage a futile adaptive brain response.

Authors: van de Wal MAE Doornbos C Bibbe JM et al.

Source: Biochimica et biophysica acta. Proteins and proteomics [Biochim Biophys Acta Proteins Proteom] 2025 Jan 01; Vol. 1873 (1), pp. 141055. Date of Electronic Publication: 2024 Oct 11.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101731734 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-1454 (Electronic) Linking ISSN: 15709639 NLM ISO Abbreviation: Biochim Biophys Acta Proteins Proteom Subsets: MEDLINE

Prior exposure to B. pertussis shapes the mucosal antibody response to acellular pertussis booster vaccination.

Authors: van Schuppen E Fröberg J Venkatasubramanian PB et al.

Source: Nature communications [Nat Commun] 2022 Dec 02; Vol. 13 (1), pp. 7429. Date of Electronic Publication: 2022 Dec 02.

Publication Type: Clinical Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome.

Authors: Singh V Moran JC Itoh Y et al.

Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2024 Dec; Vol. 31 (12), pp. 1838-1847. Date of Electronic Publication: 2024 Aug 12.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE

Publisher Correction: Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome.

Authors: Singh V Moran JC Itoh Y et al.

Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2024 Nov; Vol. 31 (11), pp. 1809.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE; PubMed not MEDLINE

In-depth insights into cervicovaginal microbial communities and hrHPV infections using high-resolution microbiome profiling.

Authors: Molina MA Andralojc KM Huynen MA et al.

Source: NPJ biofilms and microbiomes [NPJ Biofilms Microbiomes] 2022 Sep 28; Vol. 8 (1), pp. 75. Date of Electronic Publication: 2022 Sep 28.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 101666944 Publication Model: Electronic Cited Medium: Internet ISSN: 2055-5008 (Electronic) Linking ISSN: 20555008 NLM ISO Abbreviation: NPJ Biofilms Microbiomes Subsets: MEDLINE

Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes.

Authors: Garza DR von Meijenfeldt FAB van Dijk B et al.

Source: BMC ecology and evolution [BMC Ecol Evol] 2022 Aug 16; Vol. 22 (1), pp. 101. Date of Electronic Publication: 2022 Aug 16.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101775613 Publication Model: Electronic Cited Medium: Internet ISSN: 2730-7182 (Electronic) Linking ISSN: 27307182 NLM ISO Abbreviation: BMC Ecol Evol Subsets: MEDLINE

CG7630 is the Drosophila melanogaster homolog of the cytochrome c oxidase subunit COX7B.

Authors: Brischigliaro M Cabrera-Orefice A Sturlese M et al.

Source: EMBO reports [EMBO Rep] 2022 Aug 03; Vol. 23 (8), pp. e54825. Date of Electronic Publication: 2022 Jun 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 100963049 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-3178 (Electronic) Linking ISSN: 1469221X NLM ISO Abbreviation: EMBO Rep Subsets: MEDLINE

Structural and functional comparison of magnesium transporters throughout evolution.

Authors: Franken GAC Huynen MA Martínez-Cruz LA et al.

Source: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2022 Jul 12; Vol. 79 (8), pp. 418. Date of Electronic Publication: 2022 Jul 12.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Country of Publication: Switzerland NLM ID: 9705402 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-9071 (Electronic) Linking ISSN: 1420682X NLM ISO Abbreviation: Cell Mol Life Sci Subsets: MEDLINE

Targeted RNA next generation sequencing analysis of cervical smears can predict the presence of hrHPV-induced cervical lesions.

Authors: Andralojc KM Elmelik D Rasing M et al.

Source: BMC medicine [BMC Med] 2022 Jun 09; Vol. 20 (1), pp. 206. Date of Electronic Publication: 2022 Jun 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190723 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7015 (Electronic) Linking ISSN: 17417015 NLM ISO Abbreviation: BMC Med Subsets: MEDLINE