Search Results - "Jolly MK"

UNified FramewOrk for reguLatory Dynamics (UNFOLD): Dissecting robustness, plasticity, evolvability and canalisation of biological function.

Authors: Chakraborty, Debomita Rengaswamy, Raghunathan Raman, Karthik

Source: PLoS Computational Biology. 5/28/2026, Vol. 22 Issue 5, p1-20. 20p.

HOXA10-TWIST2 antagonism drives partial epithelial-to-mesenchymal transition for embryo implantation.

Authors: Ashary N Suresh S Bhide A et al.

Source: Cell death discovery [Cell Death Discov] 2025 Nov 10; Vol. 11 (1), pp. 516. Date of Electronic Publication: 2025 Nov 10.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 101665035 Publication Model: Electronic Cited Medium: Print ISSN: 2058-7716 (Print) Linking ISSN: 20587716 NLM ISO Abbreviation: Cell Death Discov Subsets: PubMed not MEDLINE

Bioenergetic reprogramming of macrophages reduces drug tolerance in Mycobacterium tuberculosis.

Authors: Yadav V Sahoo S Malhotra N et al.

Source: Nature communications [Nat Commun] 2025 Oct 23; Vol. 16 (1), pp. 9370. Date of Electronic Publication: 2025 Oct 23.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

GRiNS: a python library for simulating gene regulatory network dynamics.

Authors: Harlapur P Bv H Jolly MK

Source: BMC bioinformatics [BMC Bioinformatics] 2025 Oct 17; Vol. 26 (1), pp. 250. Date of Electronic Publication: 2025 Oct 17.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

A Phenotype-Structured PDE Framework for Investigating the Role of Hypoxic Memory on Tumor Invasion under Cyclic Hypoxia.

Authors: Sadhu G Jain P George JT et al.

Source: Bulletin of mathematical biology [Bull Math Biol] 2026 Jan 14; Vol. 88 (2), pp. 23. Date of Electronic Publication: 2026 Jan 14.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: United States NLM ID: 0401404 Publication Model: Electronic Cited Medium: Internet ISSN: 1522-9602 (Electronic) Linking ISSN: 00928240 NLM ISO Abbreviation: Bull Math Biol Subsets: MEDLINE

Author Correction: Identifying inhibitors of epithelial-mesenchymal plasticity using a network topology-based approach.

Authors: Hari K Sabuwala B Subramani BV et al.

Source: NPJ systems biology and applications [NPJ Syst Biol Appl] 2020 Jun 12; Vol. 6 (1), pp. 19. Date of Electronic Publication: 2020 Jun 12.

Publication Type: Journal Article; Published Erratum

Journal Info: Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7189 (Electronic) Linking ISSN: 20567189 NLM ISO Abbreviation: NPJ Syst Biol Appl Subsets: MEDLINE; PubMed not MEDLINE

Start small: A model for tissue-wide planar cell polarity without morphogens.

Authors: Thayambath, Abhisha Belmonte, Julio M.

Source: PLoS Computational Biology. 2/12/2026, Vol. 22 Issue 2, p1-29. 29p.

Beyond resistance: Emerging methods to dissect drug responses in Leishmania.

Authors: de Oliveira, Beatriz Cristina Dias Arias del Angel, Jorge Herrmann May, Nicole et al.

Source: PLoS Pathogens. 6/24/2026, Vol. 22 Issue 6, p1-7. 7p.

A multilevel hierarchical framework for quantification of experimental heterogeneity in population snapshot data.

Authors: Warne, David J. Zhu, Xiangrun Steele, Thomas P. et al.

Source: PLoS Computational Biology. 6/15/2026, Vol. 22 Issue 6, p1-24. 24p.

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Regulatory network and spatial modeling reveal cooperative mechanisms of resistance and immune escape in ER+ breast cancer.

Authors: Fan Y Sahoo S Jolly MK et al.

Source: BMC cancer [BMC Cancer] 2026 Feb 23; Vol. 26 (1). Date of Electronic Publication: 2026 Feb 23.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100967800 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2407 (Electronic) Linking ISSN: 14712407 NLM ISO Abbreviation: BMC Cancer Subsets: MEDLINE

Dysregulation of Transient Receptor Potential Cation Channels and Epithelial-to-Mesenchymal Transition-Related Genes in Fuchs Endothelial Corneal Dystrophy: A Bioinformatics Approach.

Authors: Gaikwad KB Bv H Narayanan J et al.

Source: Cornea [Cornea] 2026 Jul 01; Vol. 45 (7), pp. 919-928. Date of Electronic Publication: 2026 Feb 04.

Publication Type: Journal Article

Journal Info: Publisher: Lippincott Williams & Wilkins Country of Publication: United States NLM ID: 8216186 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1536-4798 (Electronic) Linking ISSN: 02773740 NLM ISO Abbreviation: Cornea Subsets: MEDLINE

TGF-β-producing tBregs are associated with poor survival rates in PTGS2-high cancers.

Authors: Premkumar K Ramu S Jolly MK et al.

Source: Cell death & disease [Cell Death Dis] 2026 Jun 26. Date of Electronic Publication: 2026 Jun 26.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101524092 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2041-4889 (Electronic) NLM ISO Abbreviation: Cell Death Dis Subsets: MEDLINE

Systems-level analysis identifies IRF6 as an inhibitor of epithelial-mesenchymal transition.

Authors: Subbalakshmi AR Agrawal A Debnath S et al.

Source: Journal of biological engineering [J Biol Eng] 2026 Jun 14. Date of Electronic Publication: 2026 Jun 14.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101306640 Publication Model: Print-Electronic Cited Medium: Print ISSN: 1754-1611 (Print) Linking ISSN: 17541611 NLM ISO Abbreviation: J Biol Eng

Endocrine therapy-specific lineage and partial epithelial-mesenchymal reprogramming defines divergent resistant cell-states in ER+ breast cancer.

Authors: Sahoo S Khanna S Senapati S et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 May 13. Date of Electronic Publication: 2026 May 13.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Bidirectional coupling among EMT, AXL-RB1 signaling and lineage switch drives resistance to osimertinib and worse clinical outcomes in NSCLC.

Authors: Vashista S Meena RK Kulkarni P et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Apr 24. Date of Electronic Publication: 2026 Apr 24.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Role of intratumoral heterogeneity in metastatic progression and drug resistance.

Authors: Sinai Borker N Sajimon J Subhadarshini S et al.

Source: Discover oncology [Discov Oncol] 2025 Sep 18; Vol. 16 (1), pp. 1689. Date of Electronic Publication: 2025 Sep 18.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Country of Publication: United States NLM ID: 101775142 Publication Model: Electronic Cited Medium: Internet ISSN: 2730-6011 (Electronic) Linking ISSN: 27306011 NLM ISO Abbreviation: Discov Oncol Subsets: PubMed not MEDLINE

Gain of function p53 mutant R273H confers distinct methylation profiles and consequent YAP/TAZ signaling mediated activation of partial or full EMT states to colon tumours.

Authors: Rani H Subhadarshini S Jolly MK et al.

Source: Epigenetics & chromatin [Epigenetics Chromatin] 2025 Dec 13; Vol. 19 (1), pp. 5. Date of Electronic Publication: 2025 Dec 13.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101471619 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-8935 (Electronic) Linking ISSN: 17568935 NLM ISO Abbreviation: Epigenetics Chromatin Subsets: MEDLINE

Brain metastases converge on shared geometric architecture and transcriptomic landscape yet remain distinct from gliomas.

Authors: Yadav N Baibhav J Subhadarshini S et al.

Source: IScience [iScience] 2026 Mar 11; Vol. 29 (4), pp. 115329. Date of Electronic Publication: 2026 Mar 11 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

Mathematical modeling of planar cell polarity: principles, approaches, and open questions.

Authors: Rizvi MS Jolly MK

Source: NPJ systems biology and applications [NPJ Syst Biol Appl] 2026 Mar 09; Vol. 12 (1). Date of Electronic Publication: 2026 Mar 09.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7189 (Electronic) Linking ISSN: 20567189 NLM ISO Abbreviation: NPJ Syst Biol Appl Subsets: MEDLINE