Search Results - "Joy JB"

Heterogeneous impacts of HIV pre-exposure prophylaxis (PrEP) on drug resistance and phylogenetic cluster transmission dynamics in British Columbia, Canada: A retrospective cohort and simulation study.

Authors: McLaughlin A Toy J Montoya V et al.

Source: PLoS medicine [PLoS Med] 2025 Dec 09; Vol. 22 (12), pp. e1004827. Date of Electronic Publication: 2025 Dec 09 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101231360 Publication Model: eCollection Cited Medium: Internet ISSN: 1549-1676 (Electronic) Linking ISSN: 15491277 NLM ISO Abbreviation: PLoS Med Subsets: MEDLINE

Getting to the root of HIV transmitted founder virus sequences.

Authors: Jones BR Brumme ZL Hunter E et al.

Source: Virus evolution [Virus Evol] 2026 Apr 20; Vol. 12 (1), pp. veag025. Date of Electronic Publication: 2026 Apr 20 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101664675 Publication Model: eCollection Cited Medium: Print ISSN: 2057-1577 (Print) Linking ISSN: 20571577 NLM ISO Abbreviation: Virus Evol Subsets: PubMed not MEDLINE

The emergence and molecular evolution of H5N1 influenza viruses in United States dairy cattle.

Authors: Pekar JE Gangavarapu K Crespo-Bellido A et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Apr 01. Date of Electronic Publication: 2026 Apr 01.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Generalized Treatment as Prevention Plus Focused Pre-Exposure Prophylaxis Is the Key to Controlling HIV/AIDS.

Authors: Montaner JSG Lima VD Salters KA et al.

Source: Tropical medicine and infectious disease [Trop Med Infect Dis] 2025 Mar 12; Vol. 10 (3). Date of Electronic Publication: 2025 Mar 12.

Publication Type: Journal Article; Review

Journal Info: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101709042 Publication Model: Electronic Cited Medium: Internet ISSN: 2414-6366 (Electronic) Linking ISSN: 24146366 NLM ISO Abbreviation: Trop Med Infect Dis Subsets: PubMed not MEDLINE

Longitudinal screening of retail milk from Canadian provinces reveals no detections of influenza A virus RNA (April-July 2024): leveraging a newly established pan-Canadian network for responding to emerging viruses.

Authors: Wallace HL Wight J Baz M et al.

Source: Canadian journal of microbiology [Can J Microbiol] 2025 Jan 01; Vol. 71, pp. 1-7. Date of Electronic Publication: 2024 Sep 27.

Publication Type: Journal Article

Journal Info: Publisher: Canadian Science Publishing Country of Publication: Canada NLM ID: 0372707 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1480-3275 (Electronic) Linking ISSN: 00084166 NLM ISO Abbreviation: Can J Microbiol Subsets: MEDLINE

Phylogeographic evaluation of the effectiveness of Canadian travel restrictions in reducing SARS-CoV-2 variant importations and burden.

Authors: McLaughlin A Montoya V Miller RL et al.

Corporate Authors: McLaughlin A Montoya V Miller RL et al.

Source: Virus evolution [Virus Evol] 2025 Oct 11; Vol. 11 (1), pp. veaf077. Date of Electronic Publication: 2025 Oct 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101664675 Publication Model: eCollection Cited Medium: Print ISSN: 2057-1577 (Print) Linking ISSN: 20571577 NLM ISO Abbreviation: Virus Evol Subsets: PubMed not MEDLINE

No Evidence of Anti-Influenza Nucleoprotein Antibodies in Retail Milk from Across Canada (April-July 2024).

Authors: Wallace HL Wight J Rzeszutek GJ et al.

Corporate Authors: Wallace HL Wight J Rzeszutek GJ et al.

Source: Viral immunology [Viral Immunol] 2025 Jul-Aug; Vol. 38 (6), pp. 228-233. Date of Electronic Publication: 2025 Jun 06.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 8801552 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8976 (Electronic) Linking ISSN: 08828245 NLM ISO Abbreviation: Viral Immunol Subsets: MEDLINE

Deciphering Cryptic Population Structure in Western Sandhill Crane Subspecies (Antigone canadensis) of the Pacific Flyway.

Authors: Joy R Roessingh K Meszaros K et al.

Source: Ecology and evolution [Ecol Evol] 2025 May 28; Vol. 15 (6), pp. e71475. Date of Electronic Publication: 2025 May 28 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Blackwell Pub. Ltd Country of Publication: England NLM ID: 101566408 Publication Model: eCollection Cited Medium: Print ISSN: 2045-7758 (Print) Linking ISSN: 20457758 NLM ISO Abbreviation: Ecol Evol Subsets: PubMed not MEDLINE

Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates With Bayesian Inference.

Authors: Jones BR Joy JB

Source: Molecular biology and evolution [Mol Biol Evol] 2023 Aug 03; Vol. 40 (8).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Community Insights in Phylogenetic HIV Research: The CIPHR Project Protocol.

Authors: Cholette F Lazarus L Macharia P et al.

Source: Global public health [Glob Public Health] 2023 Jan; Vol. 18 (1), pp. 2269435. Date of Electronic Publication: 2023 Oct 18.

Publication Type: Journal Article

Journal Info: Publisher: Informa Healthcare Country of Publication: England NLM ID: 101256323 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-1706 (Electronic) Linking ISSN: 17441692 NLM ISO Abbreviation: Glob Public Health Subsets: MEDLINE

HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy.

Authors: Shahid A Jones BR Yang JSW et al.

Source: PLoS pathogens [PLoS Pathog] 2022 Nov 04; Vol. 18 (11), pp. e1010613. Date of Electronic Publication: 2022 Nov 04 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

A simple phylogenetic approach to analyze hypermutated HIV proviruses reveals insights into their dynamics and persistence during antiretroviral therapy.

Authors: Shahid A Jones BR Duncan MC et al.

Source: Virus evolution [Virus Evol] 2024 Nov 11; Vol. 11 (1), pp. veae094. Date of Electronic Publication: 2024 Nov 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101664675 Publication Model: eCollection Cited Medium: Print ISSN: 2057-1577 (Print) Linking ISSN: 20571577 NLM ISO Abbreviation: Virus Evol Subsets: PubMed not MEDLINE

The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.

Authors: Gill EE Jia B Murall CL et al.

Source: Microbial genomics [Microb Genom] 2024 Oct; Vol. 10 (10).

Publication Type: Journal Article

Journal Info: Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858 (Electronic) Linking ISSN: 20575858 NLM ISO Abbreviation: Microb Genom Subsets: MEDLINE

Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada.

Authors: McLaughlin A Montoya V Miller RL et al.

Corporate Authors: McLaughlin A Montoya V Miller RL et al.

Source: ELife [Elife] 2022 Aug 02; Vol. 11. Date of Electronic Publication: 2022 Aug 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Assessing in vivo mutation frequencies and creating a high-resolution genome-wide map of fitness costs of Hepatitis C virus.

Authors: Tisthammer KH Solis C Orcales F et al.

Source: PLoS genetics [PLoS Genet] 2022 May 02; Vol. 18 (5), pp. e1010179. Date of Electronic Publication: 2022 May 02 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Longitudinal evolution of the HIV effective reproduction number following sequential expansion of treatment as prevention and pre-exposure prophylaxis in British Columbia, Canada: a population-level programme evaluation.

Authors: Lima VD Zhu J Barrios R et al.

Source: The lancet. HIV [Lancet HIV] 2024 Jul; Vol. 11 (7), pp. e461-e469. Date of Electronic Publication: 2024 Jun 04.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier B.V Country of Publication: Netherlands NLM ID: 101645355 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2352-3018 (Electronic) Linking ISSN: 23523018 NLM ISO Abbreviation: Lancet HIV Subsets: MEDLINE

Unifying Phylogenetic Birth-Death Models in Epidemiology and Macroevolution.

Authors: MacPherson A Louca S McLaughlin A et al.

Source: Systematic biology [Syst Biol] 2021 Dec 16; Vol. 71 (1), pp. 172-189.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN: 1076-836X (Electronic) Linking ISSN: 10635157 NLM ISO Abbreviation: Syst Biol Subsets: MEDLINE

Fundamental Identifiability Limits in Molecular Epidemiology.

Authors: Louca S McLaughlin A MacPherson A et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2021 Aug 23; Vol. 38 (9), pp. 4010-4024.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

A simple phylogenetic approach to analyze hypermutated HIV proviruses reveals insights into their dynamics and persistence during antiretroviral therapy.

Authors: Shahid A Jones BR Duncan MC et al.

Source: Research square [Res Sq] 2024 Jun 13. Date of Electronic Publication: 2024 Jun 13.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.

Authors: Gill EE Jia B Murall CL et al.

Corporate Authors: Gill EE Jia B Murall CL et al.

Source: ArXiv [ArXiv] 2024 May 08. Date of Electronic Publication: 2024 May 08.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE