Search Results - "Kagda MS"

Data navigation on the ENCODE portal.

Authors: Kagda MS Lam B Litton C et al.

Source: Nature communications [Nat Commun] 2025 Oct 30; Vol. 16 (1), pp. 9592. Date of Electronic Publication: 2025 Oct 30.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway.

Authors: Farahbod M Diab A Sud P et al.

Source: Genome research [Genome Res] 2025 Oct 06. Date of Electronic Publication: 2025 Oct 06.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

RNAget: an API to securely retrieve RNA quantifications.

Authors: Upchurch S Palumbo E Adams J et al.

Corporate Authors: Upchurch S Palumbo E Adams J et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Apr 03; Vol. 39 (4).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Telomeric TART elements target the piRNA machinery in Drosophila.

Authors: Ellison CE Kagda MS Cao W

Source: PLoS biology [PLoS Biol] 2020 Dec 21; Vol. 18 (12), pp. e3000689. Date of Electronic Publication: 2020 Dec 21 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Exploring virus presence in field-collected potato leaf samples using RNA sequencing.

Authors: Elwan EA Rabie M Aleem EEA et al.

Source: Journal, genetic engineering & biotechnology [J Genet Eng Biotechnol] 2023 Oct 20; Vol. 21 (1), pp. 106. Date of Electronic Publication: 2023 Oct 20.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V Country of Publication: Netherlands NLM ID: 101317150 Publication Model: Electronic Cited Medium: Internet ISSN: 2090-5920 (Electronic) Linking ISSN: 1687157X NLM ISO Abbreviation: J Genet Eng Biotechnol Subsets: PubMed not MEDLINE

The ENCODE Uniform Analysis Pipelines.

Authors: Hitz BC Lee JW Jolanki O et al.

Source: Research square [Res Sq] 2023 Jul 19. Date of Electronic Publication: 2023 Jul 19.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.

Authors: Luo Y Hitz BC Gabdank I et al.

Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D882-D889.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.

Authors: Reese F Williams B Balderrama-Gutierrez G et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 May 16. Date of Electronic Publication: 2023 May 16.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Annotating and prioritizing human non-coding variants with RegulomeDB v.2.

Authors: Dong S Zhao N Spragins E et al.

Source: Nature genetics [Nat Genet] 2023 May; Vol. 55 (5), pp. 724-726.

Publication Type: Letter; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

The ENCODE Uniform Analysis Pipelines.

Authors: Hitz BC Jin-Wook L Jolanki O et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 06. Date of Electronic Publication: 2023 Apr 06.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Experimental Acute Exposure to Thirdhand Smoke and Changes in the Human Nasal Epithelial Transcriptome: A Randomized Clinical Trial.

Authors: Pozuelos GL Kagda MS Schick S et al.

Source: JAMA network open [JAMA Netw Open] 2019 Jun 05; Vol. 2 (6), pp. e196362. Date of Electronic Publication: 2019 Jun 05.

Publication Type: Journal Article; Randomized Controlled Trial; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Medical Association Country of Publication: United States NLM ID: 101729235 Publication Model: Electronic Cited Medium: Internet ISSN: 2574-3805 (Electronic) Linking ISSN: 25743805 NLM ISO Abbreviation: JAMA Netw Open Subsets: MEDLINE

Niche-specific metabolic adaptation in biotrophic and necrotrophic oomycetes is manifested in differential use of nutrients, variation in gene content, and enzyme evolution.

Authors: Ah-Fong AMV Kagda MS Abrahamian M et al.

Source: PLoS pathogens [PLoS Pathog] 2019 Apr 19; Vol. 15 (4), pp. e1007729. Date of Electronic Publication: 2019 Apr 19 (Print Publication: 2019).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Phosphagen kinase function in flagellated spores of the oomycete Phytophthora infestans integrates transcriptional regulation, metabolic dynamics and protein retargeting.

Authors: Kagda MS Vu AL Ah-Fong AMV et al.

Source: Molecular microbiology [Mol Microbiol] 2018 Oct; Vol. 110 (2), pp. 296-308. Date of Electronic Publication: 2018 Oct 03.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Blackwell Scientific Publications Country of Publication: England NLM ID: 8712028 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2958 (Electronic) Linking ISSN: 0950382X NLM ISO Abbreviation: Mol Microbiol Subsets: MEDLINE

Invertases in Phytophthora infestans Localize to Haustoria and Are Programmed for Infection-Specific Expression.

Authors: Kagda MS Martínez-Soto D Ah-Fong AMV et al.

Source: MBio [mBio] 2020 Oct 13; Vol. 11 (5). Date of Electronic Publication: 2020 Oct 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101519231 Publication Model: Electronic Cited Medium: Internet ISSN: 2150-7511 (Electronic) NLM ISO Abbreviation: mBio Subsets: MEDLINE

The ENCODE Portal as an Epigenomics Resource.

Authors: Jou J Gabdank I Luo Y et al.

Source: Current protocols in bioinformatics [Curr Protoc Bioinformatics] 2019 Dec; Vol. 68 (1), pp. e89.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Country of Publication: United States NLM ID: 101157830 Publication Model: Print Cited Medium: Internet ISSN: 1934-340X (Electronic) Linking ISSN: 19343396 NLM ISO Abbreviation: Curr Protoc Bioinformatics Subsets: MEDLINE