Search Results - "Kagda MS"

Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome.

Authors: Dodero-Rojas, Esteban Mendieta, Angel Fehlis, Yao et al.

Source: PLoS Computational Biology. 12/3/2025, Vol. 21 Issue 12, p1-17. 17p.

Data navigation on the ENCODE portal.

Authors: Kagda MS Lam B Litton C et al.

Source: Nature communications [Nat Commun] 2025 Oct 30; Vol. 16 (1), pp. 9592. Date of Electronic Publication: 2025 Oct 30.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

The challenge of chromatin model comparison and validation: A project from the first international 4D Nucleome Hackathon.

Authors: Kubica, Jędrzej Korsak, Sevastianos Banecki, Krzysztof H. et al.

Source: PLoS Computational Biology. 8/19/2025, Vol. 21 Issue 8, p1-23. 23p.

The exonic SNP rs11676272-C risk allele mediates diet-induced obesity and reduces enhancer activation.

Authors: Wang W Li Y Dong S et al.

Source: EMBO reports [EMBO Rep] 2026 May; Vol. 27 (9), pp. 2462-2490. Date of Electronic Publication: 2026 Apr 06.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 100963049 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-3178 (Electronic) Linking ISSN: 1469221X NLM ISO Abbreviation: EMBO Rep Subsets: MEDLINE

Linkage: an interactive web application for linking of DNA regulatory peaks to genes.

Authors: Xu, Siwen Luo, Yuyan Liu, Zenghui et al.

Source: BMC Genomics. 10/7/2025, Vol. 26 Issue 1, p1-9. 9p.

Interferon regulatory factor 4 mediates nonenzymatic IRE1 dependency in multiple myeloma cells.

Authors: Oikonomidi, Ioanna Kameswaran, Vasumathi Pham, Victoria C. et al.

Source: PLoS Biology. 4/11/2025, Vol. 23 Issue 4, p1-34. 34p.

GWAS and 3D chromatin mapping identifies multicancer risk genes associated with hormone-dependent cancers.

Authors: Rivera, Isela Sarahi French, Juliet D. Bitar, Mainá et al.

Source: PLoS Genetics. 11/25/2024, Vol. 20 Issue 11, p1-14. 14p.

Machine learning on multiple epigenetic features reveals H3K27Ac as a driver of gene expression prediction across patients with glioblastoma.

Authors: Suita, Yusuke Bright Jr, Hardy Pu, Yuan et al.

Source: PLoS Computational Biology. 8/7/2025, Vol. 21 Issue 8, p1-22. 22p.

Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies.

Authors: Huang, Stephanie Hart, James C. Smith, James F. et al.

Source: PLoS ONE. 3/31/2025, Vol. 20 Issue 3, p1-13. 13p.

An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level.

Authors: Liu, Xiang Gillis, Nancy Jiang, Chang et al.

Source: PLoS Computational Biology. 2/9/2024, Vol. 20 Issue 2, p1-18. 18p.

Derepression of the epithelial transcription factor GRHL2 promotes direct hepatocyte-to-cholangiocyte transdifferentiation.

Authors: Vasseur, Ludivine Gheeraert, Céline Dubois-Chevalier, Julie et al.

Source: PLoS Biology. 12/12/2025, Vol. 23 Issue 12, p1-36. 36p.

Targeted analysis of dyslexia-associated regions on chromosomes 6, 12 and 15 in large multigenerational cohorts.

Authors: Chapman, Nicola H. Navas, Patrick A. Dorschner, Michael O. et al.

Source: PLoS ONE. 5/27/2025, Vol. 20 Issue 5, p1-23. 23p.

Chromatin structures from integrated AI and polymer physics model.

Authors: Schultz, Eric R. Kyhl, Soren Willett, Rebecca et al.

Source: PLoS Computational Biology. 4/9/2025, Vol. 21 Issue 4, p1-17. 17p.

Pairtools: From sequencing data to chromosome contacts.

Authors: Abdennur, Nezar Fudenberg, Geoffrey Flyamer, Ilya M. et al.

Source: PLoS Computational Biology. 5/29/2024, Vol. 20 Issue 5, p1-17. 17p.

Nuclear export is a limiting factor in eukaryotic mRNA metabolism.

Authors: Müller, Jason M. Moos, Katharina Baar, Till et al.

Source: PLoS Computational Biology. 5/16/2024, Vol. 20 Issue 5, p1-23. 23p.

Research Trends and Development Dynamics of qPCR-based Biomarkers: A Comprehensive Bibliometric Analysis.

Authors: Liu, Li Mu, Ben-Rong Zhou, Ya et al.

Source: Molecular Biotechnology. Jan2026, Vol. 68 Issue 1, p42-61. 20p.

Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integration.

Authors: Crone, Bradley Boyle, Alan P.

Source: PLoS Genetics. 8/7/2024, Vol. 20 Issue 8, p1-18. 18p.

Epstein-Barr virus protein EBNA-LP engages YY1 through leucine-rich motifs to promote naïve B cell transformation.

Authors: Cable, Jana M. Reinoso-Vizcaino, Nicolás M. White, Robert E. et al.

Source: PLoS Pathogens. 7/31/2024, Vol. 20 Issue 7, p1-30. 30p.

Genetic association and computational analysis of CYP2R1 gene polymorphisms rs2060793 and rs12794714 with vitamin D deficiency and acute myocardial infarction in the Bangladeshi population: A case control study.

Authors: Akter, Sadia Ibrahim, Md. Nazid Bin Mahmud, Zimam et al.

Source: PLoS ONE. 6/5/2026, Vol. 21 Issue 6, p1-27. 27p.

Decoding the genetic basis of demyelination: Prediction of potential pathogenic coding and regulatory noncoding MBP SNPs in multiple sclerosis.

Authors: Alwabran, Arwa Ibrahim Aldoseri, Ghalia Mahfod Aldoseri, Ghanem Mahfod et al.

Source: PLoS ONE. 5/21/2026, Vol. 21 Issue 5, p1-22. 22p.