Search Results - "Kavuluru R"

Comparison of pipelines, seq2seq models, and LLMs for rare disease information extraction.

Authors: Gupta S Ai X Jiang Y et al.

Source: Natural language processing and information systems : ... International Conference on Applications of Natural Language to Information Systems, NLDB ... revised papers. International Conference on Applications of Natural Language to Info.. [Nat Lang Process Inf Syst] 2026; Vol. 15836, pp. 49-63. Date of Electronic Publication: 2025 Jul 01.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 101706237 Publication Model: Print-Electronic Cited Medium: Print NLM ISO Abbreviation: Nat Lang Process Inf Syst Subsets: PubMed not MEDLINE

How important is domain-specific language model pretraining and instruction finetuning for biomedical relation extraction?

Authors: Brokman A Kavuluru R

Source: Natural language processing and information systems : ... International Conference on Applications of Natural Language to Information Systems, NLDB ... revised papers. International Conference on Applications of Natural Language to Info.. [Nat Lang Process Inf Syst] 2026; Vol. 15836, pp. 80-94. Date of Electronic Publication: 2025 Jul 01.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 101706237 Publication Model: Print-Electronic Cited Medium: Print NLM ISO Abbreviation: Nat Lang Process Inf Syst Subsets: PubMed not MEDLINE

A Case Demonstration of the Open Health Natural Language Processing Toolkit From the National COVID-19 Cohort Collaborative and the Researching COVID to Enhance Recovery Programs for a Natural Language Processing System for COVID-19 or Postacute Sequelae of SARS CoV-2 Infection: Algorithm Development and Validation.

Authors: Wen A Wang L He H et al.

Corporate Authors: Wen A Wang L He H et al.

Source: JMIR medical informatics [JMIR Med Inform] 2024 Sep 09; Vol. 12, pp. e49997. Date of Electronic Publication: 2024 Sep 09.

Publication Type: Journal Article

Journal Info: Publisher: JMIR Publications Country of Publication: Canada NLM ID: 101645109 Publication Model: Electronic Cited Medium: Print ISSN: 2291-9694 (Print) Linking ISSN: 22919694 NLM ISO Abbreviation: JMIR Med Inform Subsets: PubMed not MEDLINE

COVID-19 Event Extraction from Twitter via Extractive Question Answering with Continuous Prompts.

Authors: Jiang Y Kavuluru R

Source: Studies in health technology and informatics [Stud Health Technol Inform] 2024 Jan 25; Vol. 310, pp. 674-678.

Publication Type: Journal Article

Journal Info: Publisher: IOS Press Country of Publication: Netherlands NLM ID: 9214582 Publication Model: Print Cited Medium: Internet ISSN: 1879-8365 (Electronic) Linking ISSN: 09269630 NLM ISO Abbreviation: Stud Health Technol Inform

Combination of spironolactone and sitagliptin improves clinical outcomes of outpatients with COVID-19: a prospective cohort study.

Authors: Davarpanah MA Adatorwovor R Mansoori Y et al.

Source: Journal of endocrinological investigation [J Endocrinol Invest] 2024 Jan; Vol. 47 (1), pp. 235-243. Date of Electronic Publication: 2023 Jun 24.

Publication Type: Journal Article; Observational Study

Journal Info: Publisher: Springer Country of Publication: Italy NLM ID: 7806594 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1720-8386 (Electronic) Linking ISSN: 03914097 NLM ISO Abbreviation: J Endocrinol Invest Subsets: MEDLINE

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).

Authors: Liu S Wen A Wang L et al.

Source: Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2023 Nov 17; Vol. 30 (12), pp. 2036-2040.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9430800 Publication Model: Print Cited Medium: Internet ISSN: 1527-974X (Electronic) Linking ISSN: 10675027 NLM ISO Abbreviation: J Am Med Inform Assoc Subsets: MEDLINE

Do LLMs Surpass Encoders for Biomedical NER?

Authors: Obeidat MS Al Nahian MS Kavuluru R

Source: Proceedings. IEEE International Conference on Healthcare Informatics [Proc (IEEE Int Conf Healthc Inform)] 2025 Jun; Vol. 2025, pp. 352-358. Date of Electronic Publication: 2025 Jul 22.

Publication Type: Journal Article

Journal Info: Publisher: The Institute of Eletrical and Electronics Engineers, Inc Country of Publication: United States NLM ID: 101683411 Publication Model: Print-Electronic Cited Medium: Print ISSN: 2575-2626 (Print) Linking ISSN: 25752626 NLM ISO Abbreviation: Proc (IEEE Int Conf Healthc Inform) Subsets: PubMed not MEDLINE

Relation Extraction with Instance-Adapted Predicate Descriptions.

Authors: Jiang Y Kavuluru R

Source: AMIA ... Annual Symposium proceedings. AMIA Symposium [AMIA Annu Symp Proc] 2025 May 22; Vol. 2024, pp. 546-555. Date of Electronic Publication: 2025 May 22 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: American Medical Informatics Association Country of Publication: United States NLM ID: 101209213 Publication Model: eCollection Cited Medium: Internet ISSN: 1942-597X (Electronic) Linking ISSN: 15594076 NLM ISO Abbreviation: AMIA Annu Symp Proc Subsets: MEDLINE

A survey of NLP methods for oncology in the past decade with a focus on cancer registry applications.

Authors: Hands I Kavuluru R

Source: Artificial intelligence review [Artif Intell Rev] 2025; Vol. 58 (10), pp. 314. Date of Electronic Publication: 2025 Jul 16.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: England NLM ID: 9883087 Publication Model: Print-Electronic Cited Medium: Print ISSN: 0269-2821 (Print) Linking ISSN: 02692821 NLM ISO Abbreviation: Artif Intell Rev Subsets: PubMed not MEDLINE

Deep Neural Networks for Fine-Grained Surveillance of Overdose Mortality.

Authors: Ward PJ Young AM Slavova S et al.

Source: American journal of epidemiology [Am J Epidemiol] 2023 Feb 01; Vol. 192 (2), pp. 257-266.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 7910653 Publication Model: Print Cited Medium: Internet ISSN: 1476-6256 (Electronic) Linking ISSN: 00029262 NLM ISO Abbreviation: Am J Epidemiol Subsets: MEDLINE

Toward informatics-enabled preparedness for natural hazards to minimize health impacts of climate change.

Authors: Phuong J Riches NO Calzoni L et al.

Source: Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2022 Nov 14; Vol. 29 (12), pp. 2161-2167.

Publication Type: Review; Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9430800 Publication Model: Print Cited Medium: Internet ISSN: 1527-974X (Electronic) Linking ISSN: 10675027 NLM ISO Abbreviation: J Am Med Inform Assoc Subsets: MEDLINE

Knowledge-Driven Cross-Document Relation Extraction.

Authors: Jain M Mutharaju R Singh K et al.

Source: Findings of ACL. ACL [Find ACL ACL] 2024 Aug; Vol. 2024, pp. 3787-3797.

Publication Type: Journal Article

Journal Info: Publisher: Association for Computational Linguistics Country of Publication: United States NLM ID: 9919209772006676 Publication Model: Print Cited Medium: Internet NLM ISO Abbreviation: Find ACL ACL Subsets: PubMed not MEDLINE

Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.

Authors: Bennett TD Moffitt RA Hajagos JG et al.

Corporate Authors: Bennett TD Moffitt RA Hajagos JG et al.

Source: JAMA network open [JAMA Netw Open] 2021 Jul 01; Vol. 4 (7), pp. e2116901. Date of Electronic Publication: 2021 Jul 01.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Validation Study

Journal Info: Publisher: American Medical Association Country of Publication: United States NLM ID: 101729235 Publication Model: Electronic Cited Medium: Internet ISSN: 2574-3805 (Electronic) Linking ISSN: 25743805 NLM ISO Abbreviation: JAMA Netw Open Subsets: MEDLINE

Prevalence and reasons for Juul use among college students.

Authors: Ickes M Hester JW Wiggins AT et al.

Source: Journal of American college health : J of ACH [J Am Coll Health] 2020 Jul; Vol. 68 (5), pp. 455-459. Date of Electronic Publication: 2019 Mar 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Routledge Country of Publication: United States NLM ID: 8214119 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1940-3208 (Electronic) Linking ISSN: 07448481 NLM ISO Abbreviation: J Am Coll Health Subsets: MEDLINE

DeepPhe-CR: Natural Language Processing Software Services for Cancer Registrar Case Abstraction.

Authors: Hochheiser H Finan S Yuan Z et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Oct 26. Date of Electronic Publication: 2023 Oct 26.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

DeepPhe-CR: Natural Language Processing Software Services for Cancer Registrar Case Abstraction.

Authors: Hochheiser H Finan S Yuan Z et al.

Source: JCO clinical cancer informatics [JCO Clin Cancer Inform] 2023 Sep; Vol. 7, pp. e2300156.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Society of Clinical Oncology Country of Publication: United States NLM ID: 101708809 Publication Model: Print Cited Medium: Internet ISSN: 2473-4276 (Electronic) Linking ISSN: 24734276 NLM ISO Abbreviation: JCO Clin Cancer Inform Subsets: MEDLINE

A Comparative Effectiveness Study on Opioid Use Disorder Prediction Using Artificial Intelligence and Existing Risk Models.

Authors: Fouladvand S Talbert J Dwoskin LP et al.

Source: IEEE journal of biomedical and health informatics [IEEE J Biomed Health Inform] 2023 Jul; Vol. 27 (7), pp. 3589-3598. Date of Electronic Publication: 2023 Jun 30.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Institute of Electrical and Electronics Engineers Country of Publication: United States NLM ID: 101604520 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2168-2208 (Electronic) Linking ISSN: 21682194 NLM ISO Abbreviation: IEEE J Biomed Health Inform Subsets: MEDLINE

Enhancing timeliness of drug overdose mortality surveillance: A machine learning approach.

Authors: Ward PJ Rock PJ Slavova S et al.

Source: PloS one [PLoS One] 2019 Oct 16; Vol. 14 (10), pp. e0223318. Date of Electronic Publication: 2019 Oct 16 (Print Publication: 2019).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Acquisition of a Lexicon for Family History Information: Bidirectional Encoder Representations From Transformers-Assisted Sublanguage Analysis.

Authors: Wang L He H Wen A et al.

Source: JMIR medical informatics [JMIR Med Inform] 2023 Jun 27; Vol. 11, pp. e48072. Date of Electronic Publication: 2023 Jun 27.

Publication Type: Journal Article

Journal Info: Publisher: JMIR Publications Country of Publication: Canada NLM ID: 101645109 Publication Model: Electronic Cited Medium: Print ISSN: 2291-9694 (Print) Linking ISSN: 22919694 NLM ISO Abbreviation: JMIR Med Inform Subsets: PubMed not MEDLINE

End-to-End Models for Chemical-Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies.

Authors: Ai X Kavuluru R

Source: Proceedings. IEEE International Conference on Healthcare Informatics [Proc (IEEE Int Conf Healthc Inform)] 2023 Jun; Vol. 2023, pp. 610-618. Date of Electronic Publication: 2023 Dec 11.

Publication Type: Journal Article

Journal Info: Publisher: The Institute of Eletrical and Electronics Engineers, Inc Country of Publication: United States NLM ID: 101683411 Publication Model: Print-Electronic Cited Medium: Print ISSN: 2575-2626 (Print) Linking ISSN: 25752626 NLM ISO Abbreviation: Proc (IEEE Int Conf Healthc Inform) Subsets: PubMed not MEDLINE