Search Results - "Kuksa PP"

A TAD-informed aging-brain xQTL atlas of multi-modal and cell-type-resolved regulatory variation.

Authors: Cifello J Feng R Grenn FP et al.

Corporate Authors: Cifello J Feng R Grenn FP et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2026 Jun 20. Date of Electronic Publication: 2026 Jun 20.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

BTS: a scalable Bayesian Tissue Score for prioritizing GWAS variants and their functional contexts across >1000s of omics datasets.

Authors: Kuksa PP Ionita M Carter L et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Oct 02; Vol. 41 (10).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Multi-ancestry genome-wide meta-analysis of 56,241 individuals identifies known and novel cross-population and ancestry-specific associations as novel risk loci for Alzheimer's disease.

Authors: Rajabli F Benchek P Tosto G et al.

Corporate Authors: Rajabli F Benchek P Tosto G et al.

Source: Genome biology [Genome Biol] 2025 Jul 17; Vol. 26 (1), pp. 210. Date of Electronic Publication: 2025 Jul 17.

Publication Type: Journal Article; Meta-Analysis

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Alzheimer's Disease Sequencing Project release 4 whole genome sequencing dataset.

Authors: Leung YY Lee WP Kuzma AB et al.

Corporate Authors: Leung YY Lee WP Kuzma AB et al.

Source: Alzheimer's & dementia : the journal of the Alzheimer's Association [Alzheimers Dement] 2025 May; Vol. 21 (5), pp. e70237.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: John Wiley & Sons, Ltd Country of Publication: United States NLM ID: 101231978 Publication Model: Print Cited Medium: Internet ISSN: 1552-5279 (Electronic) Linking ISSN: 15525260 NLM ISO Abbreviation: Alzheimers Dement Subsets: MEDLINE

Author Correction: Genetic, transcriptomic, histological, and biochemical analysis of progressive supranuclear palsy implicates glial activation and novel risk genes.

Authors: Farrell K Humphrey J Chang T et al.

Corporate Authors: Farrell K Humphrey J Chang T et al.

Source: Nature communications [Nat Commun] 2024 Nov 13; Vol. 15 (1), pp. 9828. Date of Electronic Publication: 2024 Nov 13.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

Genetic, transcriptomic, histological, and biochemical analysis of progressive supranuclear palsy implicates glial activation and novel risk genes.

Authors: Farrell K Humphrey J Chang T et al.

Corporate Authors: Farrell K Humphrey J Chang T et al.

Source: Nature communications [Nat Commun] 2024 Sep 09; Vol. 15 (1), pp. 7880. Date of Electronic Publication: 2024 Sep 09.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

NIAGADS Alzheimer's GenomicsDB: A resource for exploring Alzheimer's disease genetic and genomic knowledge.

Authors: Greenfest-Allen E Valladares O Kuksa PP et al.

Source: Alzheimer's & dementia : the journal of the Alzheimer's Association [Alzheimers Dement] 2024 Feb; Vol. 20 (2), pp. 1123-1136. Date of Electronic Publication: 2023 Oct 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: John Wiley & Sons, Ltd Country of Publication: United States NLM ID: 101231978 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-5279 (Electronic) Linking ISSN: 15525260 NLM ISO Abbreviation: Alzheimers Dement Subsets: MEDLINE

hipFG: high-throughput harmonization and integration pipeline for functional genomics data.

Authors: Cifello J Kuksa PP Saravanan N et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Nov 01; Vol. 39 (11).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Integrated genomic analysis and CRISPRi implicates EGFR in Alzheimer's disease risk.

Authors: Leung YY Kuksa PP Carter L et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2025 Jun 26. Date of Electronic Publication: 2025 Jun 26.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Unraveling temporal dynamics of the post-mortem transcriptome in amyotrophic lateral sclerosis.

Authors: Shen T Spencer BE Kuksa PP et al.

Corporate Authors: Shen T Spencer BE Kuksa PP et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2025 Jun 13. Date of Electronic Publication: 2025 Jun 13.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

BTS: scalable Bayesian Tissue Score for prioritizing GWAS variants and their functional contexts across omics data.

Authors: Kuksa PP Ionita M Carter L et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Feb 05. Date of Electronic Publication: 2025 Feb 05.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Integrated genomic analysis and CRISPRi implicates EGFR in Alzheimer's disease risk.

Authors: Leung YY Kuksa PP Carter L et al.

Source: NPJ dementia [NPJ Dement] 2025; Vol. 1 (1), pp. 42. Date of Electronic Publication: 2025 Dec 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 9918993995206676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 3005-1940 (Electronic) Linking ISSN: 30051940 NLM ISO Abbreviation: NPJ Dement Subsets: PubMed not MEDLINE

Alzheimer's Disease Sequencing Project Release 4 Whole Genome Sequencing Dataset.

Authors: Leung YY Lee WP Kuzma AB et al.

Corporate Authors: Leung YY Lee WP Kuzma AB et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2024 Dec 06. Date of Electronic Publication: 2024 Dec 06.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

CHARMER: detecting and harmonizing high-confidence chromatin interactions across tissues and Hi-C protocols.

Authors: Cole S Kuksa PP Cifello J et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Nov 26. Date of Electronic Publication: 2024 Nov 26.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Scalable approaches for functional analyses of whole-genome sequencing non-coding variants.

Authors: Kuksa PP Greenfest-Allen E Cifello J et al.

Source: Human molecular genetics [Hum Mol Genet] 2022 Oct 20; Vol. 31 (R1), pp. R62-R72.

Publication Type: Review; Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: IRL Press at Oxford University Press Country of Publication: England NLM ID: 9208958 Publication Model: Print Cited Medium: Internet ISSN: 1460-2083 (Electronic) Linking ISSN: 09646906 NLM ISO Abbreviation: Hum Mol Genet Subsets: MEDLINE

FILER: a framework for harmonizing and querying large-scale functional genomics knowledge.

Authors: Kuksa PP Leung YY Gangadharan P et al.

Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2022 Jan 14; Vol. 4 (1), pp. lqab123. Date of Electronic Publication: 2022 Jan 14 (Print Publication: 2022).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: PubMed not MEDLINE

SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.

Authors: Kuksa PP Lee CY Amlie-Wolf A et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2020 Jun 01; Vol. 36 (12), pp. 3879-3881.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Multi-ancestry genome-wide meta-analysis of 56,241 individuals identifies LRRC4C, LHX5-AS1 and nominates ancestry-specific loci PTPRK , GRB14 , and KIAA0825 as novel risk loci for Alzheimer's disease: the Alzheimer's Disease Genetics Consortium.

Authors: Rajabli F Benchek P Tosto G et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Jul 08. Date of Electronic Publication: 2023 Jul 08.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

hipFG: High-throughput harmonization and integration pipeline for functional genomics data.

Authors: Cifello J Kuksa PP Saravanan N et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 25. Date of Electronic Publication: 2023 Apr 25.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.

Authors: Kuksa PP Amlie-Wolf A Katanić Ž et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2019 Mar 15; Vol. 35 (6), pp. 1033-1039.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE