Search Results - "Palsson BO"

Improved red blood cell storage quality of blood from donors carrying the hypermorphic PIMT I120 variant.

Authors: Bevers S Issaian AV Hay A et al.

Source: HemaSphere [Hemasphere] 2026 Apr 16; Vol. 10 (4), pp. e70361. Date of Electronic Publication: 2026 Apr 16 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 101740619 Publication Model: eCollection Cited Medium: Internet ISSN: 2572-9241 (Electronic) Linking ISSN: 25729241 NLM ISO Abbreviation: Hemasphere Subsets: PubMed not MEDLINE

Dissecting host stress responses for predictable heterologous gene expression in E. coli.

Authors: Rode C Beulig F Jönsson M et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Mar 19; Vol. 54 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The transcriptional regulatory network of the Escherichia coli MG1655 reference strain.

Authors: Bajpe H Shin J Hefner Y et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jan 22; Vol. 54 (3).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coli.

Authors: Ardalani O Phaneuf PV Krishnan J et al.

Source: PLoS pathogens [PLoS Pathog] 2025 Dec 08; Vol. 21 (12), pp. e1013775. Date of Electronic Publication: 2025 Dec 08 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

The red blood cell proteome and interactome identify a Band 3-BLVRB axis regulating hypoxic metabolic adaptation.

Authors: Issaian AV Dzieciatkowska M Bevers S et al.

Source: Blood [Blood] 2026 Jun 01. Date of Electronic Publication: 2026 Jun 01.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 7603509 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1528-0020 (Electronic) Linking ISSN: 00064971 NLM ISO Abbreviation: Blood Subsets: MEDLINE

Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of Escherichia coli.

Authors: Rychel K Chen K Catoiu EA et al.

Source: Genome biology and evolution [Genome Biol Evol] 2025 Sep 30; Vol. 17 (10).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

Longitudinal big biological data in the AI era.

Authors: Mardinoglu A Turkez H Shong M et al.

Source: Molecular systems biology [Mol Syst Biol] 2025 Sep; Vol. 21 (9), pp. 1147-1165. Date of Electronic Publication: 2025 Aug 05.

Publication Type: Journal Article; Review

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

Revealing transcriptomic responses in Escherichia coli during early antibiotic exposure.

Authors: Yuan Y Hefner Y Szubin R et al.

Source: MSystems [mSystems] 2026 Apr 21; Vol. 11 (4), pp. e0158425. Date of Electronic Publication: 2026 Mar 10.

Publication Type: Journal Article

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-5077 (Electronic) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems Subsets: MEDLINE

Multi-strain analysis of Pseudomonas putida reveals the metabolic and genetic diversity of the species.

Authors: Mueller J Krishnan J Wei Q et al.

Source: MSystems [mSystems] 2026 Apr 21; Vol. 11 (4), pp. e0159425. Date of Electronic Publication: 2026 Apr 01.

Publication Type: Journal Article

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-5077 (Electronic) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems Subsets: MEDLINE

Structure of the Enterobacter pan-genome is revealed using machine learning.

Authors: Burrows JT Li G Monk JM et al.

Source: Microbiology spectrum [Microbiol Spectr] 2026 Feb 03; Vol. 14 (2), pp. e0192225. Date of Electronic Publication: 2025 Dec 15.

Publication Type: Journal Article

Journal Info: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

Approaches for accelerating microbial gene function discovery using artificial intelligence.

Authors: Palsson BO Lee SY Kim GB

Source: Nature microbiology [Nat Microbiol] 2026 Feb; Vol. 11 (2), pp. 350-358. Date of Electronic Publication: 2026 Jan 07.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE

Gut microbial ethanol metabolism contributes to auto-brewery syndrome in an observational cohort.

Authors: Hsu CL Shukla S Freund L et al.

Source: Nature microbiology [Nat Microbiol] 2026 Feb; Vol. 11 (2), pp. 415-428. Date of Electronic Publication: 2026 Jan 08.

Publication Type: Journal Article; Observational Study

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE

Interpreting roles of mutations associated with the emergence of S. aureus USA300 strains using transcriptional regulatory network reconstruction.

Authors: Poudel S Hyun J Hefner Y et al.

Source: ELife [Elife] 2025 Apr 30; Vol. 12. Date of Electronic Publication: 2025 Apr 30.

Publication Type: Journal Article

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

RBC-GEM: A genome-scale metabolic model for systems biology of the human red blood cell.

Authors: Haiman ZB Key A D'Alessandro A et al.

Source: PLoS computational biology [PLoS Comput Biol] 2025 Mar 12; Vol. 21 (3), pp. e1012109. Date of Electronic Publication: 2025 Mar 12 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Pangenome mining of the Streptomyces genus redefines species' biosynthetic potential.

Authors: Mohite OS Jørgensen TS Booth TJ et al.

Source: Genome biology [Genome Biol] 2025 Jan 14; Vol. 26 (1), pp. 9. Date of Electronic Publication: 2025 Jan 14.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining.

Authors: Sun B Pashkova L Pieters PA et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D806-D818.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets.

Authors: Catoiu EA Krishnan J Li G et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D99-D106.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Diversity of Transcriptional Regulatory Adaptation in E. coli.

Authors: Dalldorf C Hefner Y Szubin R et al.

Source: Molecular biology and evolution [Mol Biol Evol] 2024 Nov 01; Vol. 41 (11).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

Aerobicity stimulon in Escherichia coli revealed using multi-scale computational systems biology of respiratory variants.

Authors: Patel A Banwani N Mink R et al.

Source: IScience [iScience] 2026 Jan 15; Vol. 29 (2), pp. 114715. Date of Electronic Publication: 2026 Jan 15 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

QSProteome: a community-driven interactive platform for large-scale exploration and evaluation of predicted protein complex structures.

Authors: Catoiu EA Kambo D Rodriguez B et al.

Source: Nucleic acids research [Nucleic Acids Res] 2026 Jan 06; Vol. 54 (D1), pp. D661-D672.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE