Search Results - "Prendergast JGD"

A novel reusable transcriptome-wide association study workflow used to map key genes linked to important cattle traits.

Authors: Jayaraman S Zhao R Krishna Chitneedi P et al.

Source: Genomics [Genomics] 2026 Jun 23, pp. 111284. Date of Electronic Publication: 2026 Jun 23.

Publication Type: Journal Article

Journal Info: Publisher: Academic Press Country of Publication: United States NLM ID: 8800135 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8646 (Electronic) Linking ISSN: 08887543 NLM ISO Abbreviation: Genomics Subsets: MEDLINE

High quality genome assemblies of African cattle breeds using PacBio HiFi sequencing.

Authors: Houaga I Bhati M Nziku Z et al.

Source: Scientific data [Sci Data] 2026 Jun 06. Date of Electronic Publication: 2026 Jun 06.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Structural variant landscape provides insights into genome organisation and domestication in European seabass.

Authors: Jiao Z Mukiibi R Gundappa MK et al.

Source: BMC biology [BMC Biol] 2025 Oct 01; Vol. 23 (1), pp. 288. Date of Electronic Publication: 2025 Oct 01.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

Deep learning can automate chicken tibia-breaking strength quantification to improve animal welfare.

Authors: Debnath T Wilson P Pong-Wong R et al.

Source: Poultry science [Poult Sci] 2026 Apr; Vol. 105 (4), pp. 106549. Date of Electronic Publication: 2026 Jan 30.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 0401150 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1525-3171 (Electronic) Linking ISSN: 00325791 NLM ISO Abbreviation: Poult Sci Subsets: MEDLINE

High performance imputation of structural and single nucleotide variants using low-coverage whole genome sequencing.

Authors: Gundappa MK Robledo D Hamilton A et al.

Source: Genetics, selection, evolution : GSE [Genet Sel Evol] 2025 Mar 28; Vol. 57 (1), pp. 16. Date of Electronic Publication: 2025 Mar 28.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: France NLM ID: 9114088 Publication Model: Electronic Cited Medium: Internet ISSN: 1297-9686 (Electronic) Linking ISSN: 0999193X NLM ISO Abbreviation: Genet Sel Evol Subsets: MEDLINE

Genomic Reference Resource for African Cattle: Genome Sequences and High-Density Array Variants.

Authors: Tijjani A Kambal S Terefe E et al.

Source: Scientific data [Sci Data] 2024 Jul 19; Vol. 11 (1), pp. 801. Date of Electronic Publication: 2024 Jul 19.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

The evolution and convergence of mutation spectra across mammals.

Authors: Talenti A Wilkinson T Morrison LJ et al.

Source: Communications biology [Commun Biol] 2025 May 17; Vol. 8 (1), pp. 763. Date of Electronic Publication: 2025 May 17.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Meta-analysis of heritability estimates and genome-wide association for tick-borne haemoparasites in African cattle.

Authors: Riggio V Madder M Labuschagne M et al.

Source: Frontiers in genetics [Front Genet] 2023 Jul 28; Vol. 14, pp. 1197160. Date of Electronic Publication: 2023 Jul 28 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101560621 Publication Model: eCollection Cited Medium: Print ISSN: 1664-8021 (Print) Linking ISSN: 16648021 NLM ISO Abbreviation: Front Genet Subsets: PubMed not MEDLINE

Profiling the immune epigenome across global cattle breeds.

Authors: Powell J Talenti A Fisch A et al.

Source: Genome biology [Genome Biol] 2023 May 22; Vol. 24 (1), pp. 127. Date of Electronic Publication: 2023 May 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Rare genetic variants underlie outlying levels of DNA methylation and gene-expression.

Authors: Chundru VK Marioni RE Prendergast JGD et al.

Source: Human molecular genetics [Hum Mol Genet] 2023 May 18; Vol. 32 (11), pp. 1912-1921.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: IRL Press at Oxford University Press Country of Publication: England NLM ID: 9208958 Publication Model: Print Cited Medium: Internet ISSN: 1460-2083 (Electronic) Linking ISSN: 09646906 NLM ISO Abbreviation: Hum Mol Genet Subsets: MEDLINE

Integrative genomics sheds light on the immunogenetics of tuberculosis in cattle.

Authors: O'Grady JF McHugo GP Ward JA et al.

Source: Communications biology [Commun Biol] 2025 Mar 24; Vol. 8 (1), pp. 479. Date of Electronic Publication: 2025 Mar 24.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.

Authors: Riggio V Tijjani A Callaby R et al.

Source: Genetics, selection, evolution : GSE [Genet Sel Evol] 2022 Sep 04; Vol. 54 (1), pp. 58. Date of Electronic Publication: 2022 Sep 04.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: France NLM ID: 9114088 Publication Model: Electronic Cited Medium: Internet ISSN: 1297-9686 (Electronic) Linking ISSN: 0999193X NLM ISO Abbreviation: Genet Sel Evol Subsets: MEDLINE

Author Correction: A cattle graph genome incorporating global breed diversity.

Authors: Talenti A Powell J Hemmink JD et al.

Source: Nature communications [Nat Commun] 2022 May 23; Vol. 13 (1), pp. 2983. Date of Electronic Publication: 2022 May 23.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

A locus conferring tolerance to Theileria infection in African cattle.

Authors: Wragg D Cook EAJ Latré de Laté P et al.

Source: PLoS genetics [PLoS Genet] 2022 Apr 21; Vol. 18 (4), pp. e1010099. Date of Electronic Publication: 2022 Apr 21 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

A cattle graph genome incorporating global breed diversity.

Authors: Talenti A Powell J Hemmink JD et al.

Source: Nature communications [Nat Commun] 2022 Feb 17; Vol. 13 (1), pp. 910. Date of Electronic Publication: 2022 Feb 17.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Using machine learning to detect the differential usage of novel gene isoforms.

Authors: Zhang X Hassan MA Prendergast JGD

Source: BMC bioinformatics [BMC Bioinformatics] 2022 Jan 18; Vol. 23 (1), pp. 45. Date of Electronic Publication: 2022 Jan 18.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Inherited Tolerance in Cattle to the Apicomplexan Protozoan Theileria parva is Associated with Decreased Proliferation of Parasite-Infected Lymphocytes.

Authors: Latre de Late P Cook EAJ Wragg D et al.

Source: Frontiers in cellular and infection microbiology [Front Cell Infect Microbiol] 2021 Nov 05; Vol. 11, pp. 751671. Date of Electronic Publication: 2021 Nov 05 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Frontiers Media SA Country of Publication: Switzerland NLM ID: 101585359 Publication Model: eCollection Cited Medium: Internet ISSN: 2235-2988 (Electronic) Linking ISSN: 22352988 NLM ISO Abbreviation: Front Cell Infect Microbiol Subsets: MEDLINE

Continent-wide genomic analysis of the African buffalo (Syncerus caffer).

Authors: Talenti A Wilkinson T Cook EA et al.

Source: Communications biology [Commun Biol] 2024 Jun 29; Vol. 7 (1), pp. 792. Date of Electronic Publication: 2024 Jun 29.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations.

Authors: Wiener P Robert C Ahbara A et al.

Source: Genome biology and evolution [Genome Biol Evol] 2021 Mar 01; Vol. 13 (3).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication.

Authors: Dutta P Talenti A Young R et al.

Source: Nature communications [Nat Commun] 2020 Sep 21; Vol. 11 (1), pp. 4739. Date of Electronic Publication: 2020 Sep 21.

Publication Type: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE