Search Results - "Protein domains"

VEFill: accurate and generalizable deep mutational scanning score imputation across protein domains.

Authors: Polunina PV Maier W Rubin AF

Source: Molecular systems biology [Mol Syst Biol] 2026 Jun; Vol. 22 (6), pp. 979-1002. Date of Electronic Publication: 2026 Mar 20.

Publication Type: Journal Article

Journal Info: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

ECOD: Classification of domains in AFDB Swiss-Prot structure predictions.

Authors: Schaeffer RD Zhang J Cong Q et al.

Source: PLoS computational biology [PLoS Comput Biol] 2026 Mar 30; Vol. 22 (3), pp. e1013431. Date of Electronic Publication: 2026 Mar 30 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

ZAP327 signaling domain-driven chimeric antigen receptor generates robust and long-term antitumor immunity in mouse models.

Authors: Liu X Zhang J Chu J et al.

Source: Science translational medicine [Sci Transl Med] 2025 Dec 10; Vol. 17 (828), pp. eadz0529. Date of Electronic Publication: 2025 Dec 10.

Publication Type: Journal Article

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101505086 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1946-6242 (Electronic) Linking ISSN: 19466234 NLM ISO Abbreviation: Sci Transl Med Subsets: MEDLINE

AFragmenter: schema-free, tuneable protein domain segmentation for AlphaFold protein structures.

Authors: Verwimp S Lavigne R Lood C et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Nov 01; Vol. 41 (11).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

A SWI/SNF-specific Ig-like domain, SWIFT, is a transcription factor binding platform.

Authors: Jain, Siddhant U. Williamson, Kaylyn E. Ying, Alexander W. et al.

Source: Science. 4/2/2026, Vol. 392 Issue 6793, p1-20. 20p.

Simpler Protein Domain Identification Using Spectral Clustering.

Authors: Cazals F Herrmann J Sarti E

Source: Proteins [Proteins] 2025 Jul; Vol. 93 (7), pp. 1212-1225. Date of Electronic Publication: 2025 Feb 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

Comparative performance of structural aligners in functional domain annotation.

Authors: Borujeni PM Salavati R

Source: Journal of structural biology [J Struct Biol] 2026 Jun; Vol. 218 (2), pp. 108308. Date of Electronic Publication: 2026 Mar 03.

Publication Type: Journal Article; Comparative Study

Journal Info: Publisher: Academic Press Country of Publication: United States NLM ID: 9011206 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-8657 (Electronic) Linking ISSN: 10478477 NLM ISO Abbreviation: J Struct Biol Subsets: MEDLINE

Family-level specialization in protein domain insertion architectures.

Authors: Schaeffer RD Guo R Zhang J et al.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2026 May; Vol. 35 (5), pp. e70586.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Evolution of protein domains and protein domain combinations provides insights into the origin and diversification of land plants.

Authors: Xue JY Yang CA Hu S et al.

Source: Cell genomics [Cell Genom] 2026 Apr 08; Vol. 6 (4), pp. 101107. Date of Electronic Publication: 2025 Dec 29.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE

Structural landscape of H3K27me3 recognition by protein domains and their potential for inhibition.

Authors: Rosas R Baracaldo-Lancheros LF Dykhuizen EC et al.

Source: The Journal of biological chemistry [J Biol Chem] 2026 Apr; Vol. 302 (4), pp. 111344. Date of Electronic Publication: 2026 Mar 04.

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE

Minidomains from evolution for scaffold engineering.

Authors: Devnath HS Xie J Craik DJ et al.

Source: Biotechnology advances [Biotechnol Adv] 2026 Sep; Vol. 90, pp. 108904. Date of Electronic Publication: 2026 Apr 20.

Publication Type: Journal Article; Review

Journal Info: Publisher: Elsevier Science Country of Publication: England NLM ID: 8403708 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-1899 (Electronic) Linking ISSN: 07349750 NLM ISO Abbreviation: Biotechnol Adv Subsets: MEDLINE

Structural characterization of the human CC2D1A fragment associated with non-syndromic intellectual disability (NSID).

Authors: Yeh YH Lin MG Sun XH et al.

Source: Bioscience reports [Biosci Rep] 2026 Jun 17; Vol. 46 (6).

Publication Type: Journal Article

Journal Info: Publisher: Portland Press on behalf of the Biochemical Society Country of Publication: England NLM ID: 8102797 Publication Model: Print Cited Medium: Internet ISSN: 1573-4935 (Electronic) Linking ISSN: 01448463 NLM ISO Abbreviation: Biosci Rep Subsets: MEDLINE

Evolutionary analysis of transcription elongation factors reveals conserved and lineage-specific regulatory domains.

Authors: Francette AM Grover A Clark N et al.

Source: PLoS biology [PLoS Biol] 2026 Jun 15; Vol. 24 (6), pp. e3003855. Date of Electronic Publication: 2026 Jun 15 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Phylogenetic based dissection of eukaryotic Mo-insertase functionality: From mechanism to complex assembly.

Authors: Schmidt TJ Hassan AH Pucker B et al.

Source: PloS one [PLoS One] 2026 Jun 12; Vol. 21 (6), pp. e0350191. Date of Electronic Publication: 2026 Jun 12 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Solution structure of mouse HBS1L/SKI7-specific UBA domain in complex with ubiquitin: Implications for stalled ribosome recognition.

Authors: Nameki N He F Okada M et al.

Source: PloS one [PLoS One] 2026 Jun 03; Vol. 21 (6), pp. e0348877. Date of Electronic Publication: 2026 Jun 03 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Bisphenol BPAF and BPC are agonists for estrogen receptor ERα but antagonists for N-terminal domain-lacking ERα.

Authors: Liu X Shimohigashi M Shimohigashi Y

Source: PloS one [PLoS One] 2026 Jun 01; Vol. 21 (6), pp. e0350499. Date of Electronic Publication: 2026 Jun 01 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Expression of IMD-CBM peptide induces the autophagic degradation of CAV1 (caveolin 1) to inhibit LDL transcytosis and retard diabetic atherosclerosis.

Authors: Wang L Jia X Bai X et al.

Source: Autophagy [Autophagy] 2026 Jun; Vol. 22 (6), pp. 1273-1286. Date of Electronic Publication: 2026 Feb 20.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101265188 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1554-8635 (Electronic) Linking ISSN: 15548627 NLM ISO Abbreviation: Autophagy Subsets: MEDLINE

Elucidating conformational dynamics of GDP/GTP-KRAS complexes caused by mutations from the switch domain I through Gaussian accelerated molecular dynamics simulations.

Authors: Shi S Liu A Guo Y

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jun; Vol. 44 (9), pp. 4608-4629. Date of Electronic Publication: 2026 Jan 05.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Identification of deleterious missense variants of serine peptidase inhibitor Kazal type 2 gene and their impact on KAZAL domain structure, stability, flexibility, and dimension.

Authors: Elkarhat G Ait Benichou S Redouane S et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jun; Vol. 44 (9), pp. 4642-4653. Date of Electronic Publication: 2026 Jan 30.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Exploring the impact of serine phosphorylation flanking the KxGS motif in the repeat 3 domain of human tau on tubulin detachment.

Authors: C SK Yegnaswamy S Dasgupta D et al.

Source: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2026 Jun; Vol. 44 (9), pp. 4311-4329. Date of Electronic Publication: 2025 Aug 10.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE