Search Results - "Sen TZ"

Global genomic population structure of wild and cultivated oat reveals signatures of chromosome rearrangements.

Authors: Bekele WA Avni R Birkett CL et al.

Source: Nature communications [Nat Commun] 2025 Oct 29; Vol. 16 (1), pp. 9486. Date of Electronic Publication: 2025 Oct 29.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Adoption of Standard Reference SNP Identifiers in Agricultural Genomics for Interoperability and Data Reuse.

Authors: Tello-Ruiz MK Cezard T Andorf C et al.

Source: Scientific data [Sci Data] 2026 Apr 16; Vol. 13 (1). Date of Electronic Publication: 2026 Apr 16.

Publication Type: Journal Article; Dataset; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Delivering artificial intelligence-ready genomics with the Maize Genetics and Genomics Database.

Authors: Haley OC Tibbs-Cortes LE Harding SF et al.

Source: Genetics [Genetics] 2026 Apr 04; Vol. 232 (4).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited Medium: Internet ISSN: 1943-2631 (Electronic) Linking ISSN: 00166731 NLM ISO Abbreviation: Genetics Subsets: MEDLINE

GrainGenes: genetics, genomes, and pangenomes.

Authors: Yao E Blake VC Sharma PK et al.

Source: Genetics [Genetics] 2026 Apr 04; Vol. 232 (4).

Publication Type: Journal Article; Review; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0374636 Publication Model: Print Cited Medium: Internet ISSN: 1943-2631 (Electronic) Linking ISSN: 00166731 NLM ISO Abbreviation: Genetics Subsets: MEDLINE

A pangenome and pantranscriptome of hexaploid oat.

Authors: Avni R Kamal N Bitz L et al.

Source: Nature [Nature] 2026 Jan; Vol. 649 (8095), pp. 131-139. Date of Electronic Publication: 2025 Oct 29.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Chromosome-level haplotype-resolved genome assembly of bread wheat's wild relative Aegilops mutica.

Authors: Grewal S Yang CY Krasheninnikova K et al.

Source: Scientific data [Sci Data] 2025 Mar 13; Vol. 12 (1), pp. 438. Date of Electronic Publication: 2025 Mar 13.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data.

Authors: Poretsky E Blake VC Andorf CM et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2025 Feb 17; Vol. 2025.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

Author Correction: A pangenome and pantranscriptome of hexaploid oat.

Authors: Avni R Kamal N Bitz L et al.

Source: Nature [Nature] 2025 Dec; Vol. 648 (8093), pp. E5.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; In Process

Structural Variability of Pfam Domains Based on Alphafold2 Predictions.

Authors: Poretsky E Andorf CM Sen TZ

Source: Proteins [Proteins] 2025 Dec; Vol. 93 (12), pp. 2182-2192. Date of Electronic Publication: 2025 Jul 22.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

​Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species.

Authors: Kim HS Haley OC Portwood Ii JL et al.

Source: BMC microbiology [BMC Microbiol] 2024 Sep 06; Vol. 24 (1), pp. 326. Date of Electronic Publication: 2024 Sep 06.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE

Chromosome-scale genome assembly of bread wheat's wild relative Triticum timopheevii.

Authors: Grewal S Yang CY Scholefield D et al.

Source: Scientific data [Sci Data] 2024 Apr 23; Vol. 11 (1), pp. 420. Date of Electronic Publication: 2024 Apr 23.

Publication Type: Dataset; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Genome-wide association studies on resistance to powdery mildew in cultivated emmer wheat.

Authors: Lhamo D Li G Song G et al.

Source: The plant genome [Plant Genome] 2025 Mar; Vol. 18 (1), pp. e20493. Date of Electronic Publication: 2024 Jul 28.

Publication Type: Journal Article

Journal Info: Publisher: Crop Science Society of America Country of Publication: United States NLM ID: 101273919 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1940-3372 (Electronic) Linking ISSN: 19403372 NLM ISO Abbreviation: Plant Genome Subsets: MEDLINE

Updated guidelines for gene nomenclature in wheat.

Authors: Boden SA McIntosh RA Uauy C et al.

Corporate Authors: Boden SA McIntosh RA Uauy C et al.

Source: TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [Theor Appl Genet] 2023 Mar 23; Vol. 136 (4), pp. 72. Date of Electronic Publication: 2023 Mar 23.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 0145600 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-2242 (Electronic) Linking ISSN: 00405752 NLM ISO Abbreviation: Theor Appl Genet Subsets: MEDLINE

Co-expression pan-network reveals genes involved in complex traits within maize pan-genome.

Authors: Cagirici HB Andorf CM Sen TZ

Source: BMC plant biology [BMC Plant Biol] 2022 Dec 19; Vol. 22 (1), pp. 595. Date of Electronic Publication: 2022 Dec 19.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229 (Electronic) Linking ISSN: 14712229 NLM ISO Abbreviation: BMC Plant Biol Subsets: MEDLINE

G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

Authors: Cagirici HB Budak H Sen TZ

Source: BMC bioinformatics [BMC Bioinformatics] 2022 Jun 18; Vol. 23 (1), pp. 240. Date of Electronic Publication: 2022 Jun 18.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

GrainGenes: a data-rich repository for small grains genetics and genomics.

Authors: Yao E Blake VC Cooper L et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2022 May 25; Vol. 2022.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits.

Authors: Poretsky E Cagirici HB Andorf CM et al.

Source: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 May 07; Vol. 14 (5).

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium: Internet ISSN: 2160-1836 (Electronic) Linking ISSN: 21601836 NLM ISO Abbreviation: G3 (Bethesda) Subsets: MEDLINE

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.

Authors: Banerjee S Bhandary P Woodhouse M et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2021 Apr 20; Vol. 22 (1), pp. 205. Date of Electronic Publication: 2021 Apr 20.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants.

Authors: Cagirici HB Galvez S Sen TZ et al.

Source: Functional & integrative genomics [Funct Integr Genomics] 2021 Mar; Vol. 21 (2), pp. 195-204. Date of Electronic Publication: 2021 Feb 26.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 100939343 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1438-7948 (Electronic) Linking ISSN: 1438793X NLM ISO Abbreviation: Funct Integr Genomics Subsets: MEDLINE

JBrowse Connect: A server API to connect JBrowse instances and users.

Authors: Yao E Buels R Stein L et al.

Source: PLoS computational biology [PLoS Comput Biol] 2020 Aug 18; Vol. 16 (8), pp. e1007261. Date of Electronic Publication: 2020 Aug 18 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE