Search Results - "Smith TPL"

A chromosome level reference genome for the pecan weevil, Curculio caryae.

Authors: Perkin LC Cohen ZP Sim SB et al.

Source: Scientific data [Sci Data] 2026 Mar 18; Vol. 13 (1). Date of Electronic Publication: 2026 Mar 18.

Publication Type: Journal Article; Dataset

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Identification of cis-regulatory elements provides insights into tissue-specific gene regulation in the sheep genome.

Authors: Xie S Davenport KM Salavati M et al.

Source: Nature communications [Nat Commun] 2026 Mar 16; Vol. 17 (1). Date of Electronic Publication: 2026 Mar 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Phased-assembly-driven pangenome graphs for structural variant genotyping and complex trait mapping in dairy cattle.

Authors: Yang L Gao Y Kuhn KL et al.

Source: Nature communications [Nat Commun] 2026 Jan 30; Vol. 17 (1). Date of Electronic Publication: 2026 Jan 30.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Insights into natural neocentromere evolution from a cattle T2T X chromosome.

Authors: Pineda PS MacPhillamy C Ren Y et al.

Source: Nature communications [Nat Commun] 2025 Nov 28; Vol. 16 (1), pp. 10745. Date of Electronic Publication: 2025 Nov 28.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression.

Authors: Wang X Nursyifa C Aninta SG et al.

Source: Nature communications [Nat Commun] 2025 Sep 25; Vol. 16 (1), pp. 8192. Date of Electronic Publication: 2025 Sep 25.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Immunogenomics Approaches to Studying Antibody Repertoires and Vaccine Responses in Ruminants.

Authors: Safonova Y Collins A Murdoch BM et al.

Source: Annual review of animal biosciences [Annu Rev Anim Biosci] 2026 Feb; Vol. 14 (1), pp. 49-65. Date of Electronic Publication: 2025 Nov 21.

Publication Type: Journal Article; Review

Journal Info: Publisher: Annual Reviews Country of Publication: United States NLM ID: 101614024 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-8110 (Electronic) Linking ISSN: 21658102 NLM ISO Abbreviation: Annu Rev Anim Biosci Subsets: MEDLINE

Population structure and domestication history of the Javan banteng.

Authors: Wang X Aninta SG Garcia-Erill G et al.

Source: Current biology : CB [Curr Biol] 2026 Jan 19; Vol. 36 (2), pp. 458-473.e8.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: England NLM ID: 9107782 Publication Model: Print Cited Medium: Internet ISSN: 1879-0445 (Electronic) Linking ISSN: 09609822 NLM ISO Abbreviation: Curr Biol Subsets: MEDLINE

Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle.

Authors: Gao Y Yang L Kuhn K et al.

Source: Journal of advanced research [J Adv Res] 2026 Jan; Vol. 79, pp. 137-150. Date of Electronic Publication: 2025 Apr 19.

Publication Type: Journal Article

Journal Info: Publisher: Cairo University, production and hosting by Elsevier B. V Country of Publication: Egypt NLM ID: 101546952 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2090-1224 (Electronic) Linking ISSN: 20901224 NLM ISO Abbreviation: J Adv Res Subsets: MEDLINE

Finishing a complete giraffe genome from telomere to telomere with Verkko-Fillet.

Authors: Kim J Rosen BD Fumagalli SE et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Dec 03. Date of Electronic Publication: 2025 Dec 03.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Bighorn sheep T2T genome assembly reveals differences in immune genes: a potential cause of high morbidity due to respiratory pathogens.

Authors: Olagunju TA Pospelova M Schwartz JC et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Oct 02. Date of Electronic Publication: 2025 Oct 02.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations.

Authors: Liu X Lin L Sinding MS et al.

Source: Nature communications [Nat Commun] 2024 Apr 12; Vol. 15 (1), pp. 2921. Date of Electronic Publication: 2024 Apr 12.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Phase variation in Mannheimia haemolytica challenges the static genome paradigm.

Authors: Harhay GP McClure KK Brader KD et al.

Source: Microbiology spectrum [Microbiol Spectr] 2025 Sep 02; Vol. 13 (9), pp. e0001025. Date of Electronic Publication: 2025 Jul 23.

Publication Type: Journal Article

Journal Info: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival.

Authors: Balboa RF Bertola LD Brüniche-Olsen A et al.

Source: Nature communications [Nat Commun] 2024 Jan 03; Vol. 15 (1), pp. 172. Date of Electronic Publication: 2024 Jan 03.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

The Genome of the Yellow Mealworm, Tenebrio molitor: It's Bigger Than You Think.

Authors: Oppert B Dossey AT Chu FC et al.

Source: Genes [Genes (Basel)] 2023 Dec 14; Vol. 14 (12). Date of Electronic Publication: 2023 Dec 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species.

Authors: Smith TPL Bickhart DM Boichard D et al.

Corporate Authors: Smith TPL Bickhart DM Boichard D et al.

Source: Genome biology [Genome Biol] 2023 Jun 19; Vol. 24 (1), pp. 139. Date of Electronic Publication: 2023 Jun 19.

Publication Type: Letter; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies.

Authors: Ren Y Tseng E Smith TPL et al.

Source: BMC genomics [BMC Genomics] 2023 Mar 13; Vol. 24 (1), pp. 108. Date of Electronic Publication: 2023 Mar 13.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Defining the caprine γδ T cell WC1 multigenic array and evaluation of its expressed sequences and gene structure conservation among goat breeds and relative to cattle.

Authors: Yirsaw AW Gillespie A Zhang F et al.

Source: Immunogenetics [Immunogenetics] 2022 Jun; Vol. 74 (3), pp. 347-365. Date of Electronic Publication: 2022 Feb 09.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Springer Verlag Country of Publication: United States NLM ID: 0420404 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1211 (Electronic) Linking ISSN: 00937711 NLM ISO Abbreviation: Immunogenetics Subsets: MEDLINE

Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.

Authors: Leonard AS Crysnanto D Fang ZH et al.

Source: Nature communications [Nat Commun] 2022 May 31; Vol. 13 (1), pp. 3012. Date of Electronic Publication: 2022 May 31.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle.

Authors: Low WY Rosen BD Ren Y et al.

Source: BMC genomics [BMC Genomics] 2022 May 04; Vol. 23 (1), pp. 344. Date of Electronic Publication: 2022 May 04.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success.

Authors: Oppert B Muszewska A Steczkiewicz K et al.

Source: Genes [Genes (Basel)] 2022 Feb 28; Vol. 13 (3). Date of Electronic Publication: 2022 Feb 28.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE