Search Results - "van Treeck M"

545P HIBRID: Histology and ct-DNA based risk-stratification with deep learning.

Authors: Loeffler, C.M.L. Sainath, S. Jiang, X. et al.

Source: Annals of Oncology. 2024 Supplement 2, Vol. 35, pS454-S454. 1p.

Benchmarking foundation models as feature extractors for weakly supervised computational pathology.

Authors: Neidlinger P El Nahhas OSM Muti HS et al.

Source: Nature biomedical engineering [Nat Biomed Eng] 2026 Jun; Vol. 10 (6), pp. 1113-1123. Date of Electronic Publication: 2025 Oct 01.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

A software pipeline for medical information extraction with large language models, open source and suitable for oncology.

Authors: Wiest IC Wolf F Leßmann ME et al.

Source: NPJ precision oncology [NPJ Precis Oncol] 2025 Sep 17; Vol. 9 (1), pp. 313. Date of Electronic Publication: 2025 Sep 17.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101708166 Publication Model: Electronic Cited Medium: Print ISSN: 2397-768X (Print) Linking ISSN: 2397768X NLM ISO Abbreviation: NPJ Precis Oncol Subsets: PubMed not MEDLINE

HIBRID: histology-based risk-stratification with deep learning and ctDNA in colorectal cancer.

Authors: Loeffler CML Bando H Sainath S et al.

Source: Nature communications [Nat Commun] 2025 Aug 14; Vol. 16 (1), pp. 7561. Date of Electronic Publication: 2025 Aug 14.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Weakly Supervised Deep Learning Can Analyze Focal Liver Lesions in Contrast-Enhanced Ultrasound.

Authors: Oezsoy A Brooks JA van Treeck M et al.

Source: Digestion [Digestion] 2025; Vol. 106 (6), pp. 502-514. Date of Electronic Publication: 2025 Mar 06.

Publication Type: Journal Article

Journal Info: Publisher: Karger Country of Publication: Switzerland NLM ID: 0150472 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1421-9867 (Electronic) Linking ISSN: 00122823 NLM ISO Abbreviation: Digestion Subsets: MEDLINE

Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types.

Authors: Loeffler CML El Nahhas OSM Muti HS et al.

Source: BMC biology [BMC Biol] 2024 Oct 08; Vol. 22 (1), pp. 225. Date of Electronic Publication: 2024 Oct 08.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

Vision-language models for automated video analysis and documentation in laparoscopic surgery: a proof-of-concept study.

Authors: Stueker EH Kolbinger FR Saldanha OL et al.

Source: International journal of surgery (London, England) [Int J Surg] 2025 Nov 01; Vol. 111 (11), pp. 7777-7786. Date of Electronic Publication: 2025 Jul 17.

Publication Type: Journal Article; Observational Study; Comparative Study

Journal Info: Publisher: Wolters Kluwer Health, Inc Country of Publication: United States NLM ID: 101228232 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1743-9159 (Electronic) Linking ISSN: 17439159 NLM ISO Abbreviation: Int J Surg Subsets: MEDLINE

Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology.

Authors: Gustav M Reitsam NG Carrero ZI et al.

Source: NPJ precision oncology [NPJ Precis Oncol] 2024 May 23; Vol. 8 (1), pp. 115. Date of Electronic Publication: 2024 May 23.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101708166 Publication Model: Electronic Cited Medium: Print ISSN: 2397-768X (Print) Linking ISSN: 2397768X NLM ISO Abbreviation: NPJ Precis Oncol Subsets: PubMed not MEDLINE

Artificial intelligence predicts outcome-related molecular profiles and vascular invasion in hepatocellular carcinoma.

Authors: Seraphin TP Mesropian A Žigutytė L et al.

Source: JHEP reports : innovation in hepatology [JHEP Rep] 2025 Sep 11; Vol. 7 (12), pp. 101592. Date of Electronic Publication: 2025 Sep 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V Country of Publication: Netherlands NLM ID: 101761237 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-5559 (Electronic) Linking ISSN: 25895559 NLM ISO Abbreviation: JHEP Rep Subsets: PubMed not MEDLINE

Assessing genotype-phenotype correlations in colorectal cancer with deep learning: a multicentre cohort study.

Authors: Gustav M van Treeck M Reitsam NG et al.

Source: The Lancet. Digital health [Lancet Digit Health] 2025 Aug; Vol. 7 (8), pp. 100891. Date of Electronic Publication: 2025 Aug 19.

Publication Type: Journal Article; Multicenter Study

Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101751302 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2589-7500 (Electronic) Linking ISSN: 25897500 NLM ISO Abbreviation: Lancet Digit Health Subsets: MEDLINE

Author Correction: Regression-based Deep-Learning predicts molecular biomarkers from pathology slides.

Authors: El Nahhas OSM Loeffler CML Carrero ZI et al.

Source: Nature communications [Nat Commun] 2024 Feb 29; Vol. 15 (1), pp. 1868. Date of Electronic Publication: 2024 Feb 29.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

Regression-based Deep-Learning predicts molecular biomarkers from pathology slides.

Authors: El Nahhas OSM Loeffler CML Carrero ZI et al.

Source: Nature communications [Nat Commun] 2024 Feb 10; Vol. 15 (1), pp. 1253. Date of Electronic Publication: 2024 Feb 10.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Prediction models for hormone receptor status in female breast cancer do not extend to males: further evidence of sex-based disparity in breast cancer.

Authors: Chatterji S Niehues JM van Treeck M et al.

Source: NPJ breast cancer [NPJ Breast Cancer] 2023 Nov 08; Vol. 9 (1), pp. 91. Date of Electronic Publication: 2023 Nov 08.

Publication Type: Journal Article

Journal Info: Publisher: Breast Cancer Research Foundation Country of Publication: United States NLM ID: 101674891 Publication Model: Electronic Cited Medium: Print ISSN: 2374-4677 (Print) Linking ISSN: 23744677 NLM ISO Abbreviation: NPJ Breast Cancer Subsets: PubMed not MEDLINE

Direct image to subtype prediction for brain tumors using deep learning.

Authors: Hewitt KJ Löffler CML Muti HS et al.

Source: Neuro-oncology advances [Neurooncol Adv] 2023 Nov 01; Vol. 5 (1), pp. vdad139. Date of Electronic Publication: 2023 Nov 01 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101755003 Publication Model: eCollection Cited Medium: Internet ISSN: 2632-2498 (Electronic) Linking ISSN: 26322498 NLM ISO Abbreviation: Neurooncol Adv Subsets: PubMed not MEDLINE

Deep learning can predict cardiovascular events from liver imaging.

Authors: Veldhuizen GP Lenz T Cifci D et al.

Source: JHEP reports : innovation in hepatology [JHEP Rep] 2025 Apr 22; Vol. 7 (8), pp. 101427. Date of Electronic Publication: 2025 Apr 22 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V Country of Publication: Netherlands NLM ID: 101761237 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-5559 (Electronic) Linking ISSN: 25895559 NLM ISO Abbreviation: JHEP Rep Subsets: PubMed not MEDLINE

Assessing Genotype-Phenotype Correlations with Deep Learning in Colorectal Cancer: A Multi-Centric Study.

Authors: Gustav M van Treeck M Reitsam NG et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2025 Feb 08. Date of Electronic Publication: 2025 Feb 08.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology.

Authors: El Nahhas OSM van Treeck M Wölflein G et al.

Source: Nature protocols [Nat Protoc] 2025 Jan; Vol. 20 (1), pp. 293-316. Date of Electronic Publication: 2024 Sep 16.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE

Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology.

Authors: Saldanha OL Loeffler CML Niehues JM et al.

Source: NPJ precision oncology [NPJ Precis Oncol] 2023 Mar 28; Vol. 7 (1), pp. 35. Date of Electronic Publication: 2023 Mar 28.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101708166 Publication Model: Electronic Cited Medium: Print ISSN: 2397-768X (Print) Linking ISSN: 2397768X NLM ISO Abbreviation: NPJ Precis Oncol Subsets: PubMed not MEDLINE

Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning.

Authors: Saldanha OL Muti HS Grabsch HI et al.

Source: Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association [Gastric Cancer] 2023 Mar; Vol. 26 (2), pp. 264-274. Date of Electronic Publication: 2022 Oct 20.

Publication Type: Journal Article

Journal Info: Publisher: Springer-Verlag Tokyo Country of Publication: Japan NLM ID: 100886238 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1436-3305 (Electronic) Linking ISSN: 14363291 NLM ISO Abbreviation: Gastric Cancer Subsets: MEDLINE

Adversarial attacks and adversarial robustness in computational pathology.

Authors: Ghaffari Laleh N Truhn D Veldhuizen GP et al.

Source: Nature communications [Nat Commun] 2022 Sep 29; Vol. 13 (1), pp. 5711. Date of Electronic Publication: 2022 Sep 29.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE