Understanding pneumococcal serotype 1 biology through population genomic analysis.

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Title: Understanding pneumococcal serotype 1 biology through population genomic analysis.
Authors: Chaguza C; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK. Chrispin.Chaguza@liverpool.ac.uk.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi. Chrispin.Chaguza@liverpool.ac.uk., Cornick JE; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi., Harris SR; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK., Andam CP; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Department of Epidemiology, Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Massachusetts, MA, 02115, USA., Bricio-Moreno L; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK., Yang M; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK., Yalcin F; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK., Ousmane S; Unité de Biologie, Centre de Recherche Médicale et Sanitaire (CERMES), Niamey, Niger., Govindpersad S; National Institute for Communicable Diseases (NICD), Johannesburg, South Africa., Senghore M; Bacterial Diseases Programme, Medical Research Council (MRC), Banjul, The Gambia.; Division of Translational and Systems Medicine, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK., Ebruke C; Bacterial Diseases Programme, Medical Research Council (MRC), Banjul, The Gambia.; Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK., Du Plessis M; National Institute for Communicable Diseases (NICD), Johannesburg, South Africa., Kiran AM; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi., Pluschke G; Swiss Tropical and Public Health Institute, Basel, Switzerland., Sigauque B; Centro de Investigação em Saúde da Manhiça, Maputo, Mozambique., McGee L; Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, GA 30329, USA., Klugman KP; Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, 30322, USA.; Bill and Melinda Gates Foundation, Seattle, WA, 98109, USA., Turner P; Cambodia Oxford Medical Research Unit, Angkor Hospital for Children, Siem Reap, Cambodia.; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK., Corander J; Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland., Parkhill J; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK., Collard JM; Unité de Biologie, Centre de Recherche Médicale et Sanitaire (CERMES), Niamey, Niger., Antonio M; Bacterial Diseases Programme, Medical Research Council (MRC), Banjul, The Gambia.; Division of Translational and Systems Medicine, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK.; Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK., von Gottberg A; National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.; School of Pathology, University of the Witwatersrand, Johannesburg, South Africa., Heyderman RS; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi.; Division of Infection and Immunity, University College London, London, WC1E 6BT, UK., French N; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi., Kadioglu A; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK., Hanage WP; Department of Epidemiology, Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Massachusetts, MA, 02115, USA., Everett DB; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi., Bentley SD; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK. sdb@sanger.ac.uk.; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK. sdb@sanger.ac.uk.
Corporate Authors: PAGe Consortium
Source: BMC infectious diseases [BMC Infect Dis] 2016 Nov 08; Vol. 16 (1), pp. 649. Date of Electronic Publication: 2016 Nov 08.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100968551 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2334 (Electronic) Linking ISSN: 14712334 NLM ISO Abbreviation: BMC Infect Dis Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Chaguza+C%22">Chaguza C</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK. Chrispin.Chaguza@liverpool.ac.uk.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi. Chrispin.Chaguza@liverpool.ac.uk.<br /><searchLink fieldCode="AU" term="%22Cornick+JE%22">Cornick JE</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Harris+SR%22">Harris SR</searchLink>; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK.<br /><searchLink fieldCode="AU" term="%22Andam+CP%22">Andam CP</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Department of Epidemiology, Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Massachusetts, MA, 02115, USA.<br /><searchLink fieldCode="AU" term="%22Bricio-Moreno+L%22">Bricio-Moreno L</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.<br /><searchLink fieldCode="AU" term="%22Yang+M%22">Yang M</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.<br /><searchLink fieldCode="AU" term="%22Yalcin+F%22">Yalcin F</searchLink>; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK.<br /><searchLink fieldCode="AU" term="%22Ousmane+S%22">Ousmane S</searchLink>; Unité de Biologie, Centre de Recherche Médicale et Sanitaire (CERMES), Niamey, Niger.<br /><searchLink fieldCode="AU" term="%22Govindpersad+S%22">Govindpersad S</searchLink>; National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.<br /><searchLink fieldCode="AU" term="%22Senghore+M%22">Senghore M</searchLink>; 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Swiss Tropical and Public Health Institute, Basel, Switzerland.<br /><searchLink fieldCode="AU" term="%22Sigauque+B%22">Sigauque B</searchLink>; Centro de Investigação em Saúde da Manhiça, Maputo, Mozambique.<br /><searchLink fieldCode="AU" term="%22McGee+L%22">McGee L</searchLink>; Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, GA 30329, USA.<br /><searchLink fieldCode="AU" term="%22Klugman+KP%22">Klugman KP</searchLink>; Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, 30322, USA.; Bill and Melinda Gates Foundation, Seattle, WA, 98109, USA.<br /><searchLink fieldCode="AU" term="%22Turner+P%22">Turner P</searchLink>; Cambodia Oxford Medical Research Unit, Angkor Hospital for Children, Siem Reap, Cambodia.; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK.<br /><searchLink fieldCode="AU" term="%22Corander+J%22">Corander J</searchLink>; Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland.<br /><searchLink fieldCode="AU" term="%22Parkhill+J%22">Parkhill J</searchLink>; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SA, UK.<br /><searchLink fieldCode="AU" term="%22Collard+JM%22">Collard JM</searchLink>; Unité de Biologie, Centre de Recherche Médicale et Sanitaire (CERMES), Niamey, Niger.<br /><searchLink fieldCode="AU" term="%22Antonio+M%22">Antonio M</searchLink>; Bacterial Diseases Programme, Medical Research Council (MRC), Banjul, The Gambia.; Division of Translational and Systems Medicine, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK.; Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.<br /><searchLink fieldCode="AU" term="%22von+Gottberg+A%22">von Gottberg A</searchLink>; National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.; School of Pathology, University of the Witwatersrand, Johannesburg, South Africa.<br /><searchLink fieldCode="AU" term="%22Heyderman+RS%22">Heyderman RS</searchLink>; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi.; Division of Infection and Immunity, University College London, London, WC1E 6BT, UK.<br /><searchLink fieldCode="AU" term="%22French+N%22">French N</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi.<br /><searchLink fieldCode="AU" term="%22Kadioglu+A%22">Kadioglu A</searchLink>; Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, L69 7BE, UK.<br /><searchLink fieldCode="AU" term="%22Hanage+WP%22">Hanage WP</searchLink>; 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