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An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).

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Title: An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
Authors: Liu S; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA., Wen A; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA., Wang L; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA., He H; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA., Fu S; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA., Miller R; Tufts Clinical and Translational Science Institute, Tufts Medical Center, Boston, Massachusetts, USA., Williams A; Tufts Clinical and Translational Science Institute, Tufts Medical Center, Boston, Massachusetts, USA., Harris D; Department of Internal Medicine, University of Kentucky, Lexington, Kentucky, USA., Kavuluru R; Department of Internal Medicine, University of Kentucky, Lexington, Kentucky, USA., Liu M; Department of Internal Medicine, University of Kansas Medical Center, Kansas City, Kansas, USA., Abu-El-Rub N; Department of Internal Medicine, University of Kansas Medical Center, Kansas City, Kansas, USA., Schutte D; Department of Pharmaceutical Care & Health Systems, University of Minnesota at Twin Cities, Minneapolis, Minnesota, USA., Zhang R; Department of Pharmaceutical Care & Health Systems, University of Minnesota at Twin Cities, Minneapolis, Minnesota, USA., Rouhizadeh M; Department of Pharmaceutical Outcomes & Policy, University of Florida, Gainesville, Florida, USA., Osborne JD; Department of Computer Science, University of Alabama at Birmingham, Birmingham, Alabama, USA., He Y; Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA., Topaloglu U; Department of Cancer Biology, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA., Hong SS; Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA., Saltz JH; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York, USA., Schaffter T; Sage Bionetwork, Seattle, Washington, USA., Pfaff E; Department of Medicine, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, USA., Chute CG; Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA., Duong T; Department of Radiology, Albert Einstein College of Medicine, Bronx, New York, USA., Haendel MA; Center for Health AI, University of Colorado Anschutz Medical Campus, Denver, Colorado, USA., Fuentes R; Alex Informatics, North Bethesda, Maryland, USA., Szolovits P; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Xu H; School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA., Liu H; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.; School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Source: Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2023 Nov 17; Vol. 30 (12), pp. 2036-2040.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9430800 Publication Model: Print Cited Medium: Internet ISSN: 1527-974X (Electronic) Linking ISSN: 10675027 NLM ISO Abbreviation: J Am Med Inform Assoc Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
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  Data: <searchLink fieldCode="AU" term="%22Liu+S%22">Liu S</searchLink>; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22Wen+A%22">Wen A</searchLink>; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22Wang+L%22">Wang L</searchLink>; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22He+H%22">He H</searchLink>; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22Fu+S%22">Fu S</searchLink>; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22Miller+R%22">Miller R</searchLink>; Tufts Clinical and Translational Science Institute, Tufts Medical Center, Boston, Massachusetts, USA.<br /><searchLink fieldCode="AU" term="%22Williams+A%22">Williams A</searchLink>; Tufts Clinical and Translational Science Institute, Tufts Medical Center, Boston, Massachusetts, USA.<br /><searchLink fieldCode="AU" term="%22Harris+D%22">Harris D</searchLink>; Department of Internal Medicine, University of Kentucky, Lexington, Kentucky, USA.<br /><searchLink fieldCode="AU" term="%22Kavuluru+R%22">Kavuluru R</searchLink>; Department of Internal Medicine, University of Kentucky, Lexington, Kentucky, USA.<br /><searchLink fieldCode="AU" term="%22Liu+M%22">Liu M</searchLink>; Department of Internal Medicine, University of Kansas Medical Center, Kansas City, Kansas, USA.<br /><searchLink fieldCode="AU" term="%22Abu-El-Rub+N%22">Abu-El-Rub N</searchLink>; Department of Internal Medicine, University of Kansas Medical Center, Kansas City, Kansas, USA.<br /><searchLink fieldCode="AU" term="%22Schutte+D%22">Schutte D</searchLink>; Department of Pharmaceutical Care & Health Systems, University of Minnesota at Twin Cities, Minneapolis, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+R%22">Zhang R</searchLink>; Department of Pharmaceutical Care & Health Systems, University of Minnesota at Twin Cities, Minneapolis, Minnesota, USA.<br /><searchLink fieldCode="AU" term="%22Rouhizadeh+M%22">Rouhizadeh M</searchLink>; Department of Pharmaceutical Outcomes & Policy, University of Florida, Gainesville, Florida, USA.<br /><searchLink fieldCode="AU" term="%22Osborne+JD%22">Osborne JD</searchLink>; Department of Computer Science, University of Alabama at Birmingham, Birmingham, Alabama, USA.<br /><searchLink fieldCode="AU" term="%22He+Y%22">He Y</searchLink>; Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA.<br /><searchLink fieldCode="AU" term="%22Topaloglu+U%22">Topaloglu U</searchLink>; Department of Cancer Biology, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA.<br /><searchLink fieldCode="AU" term="%22Hong+SS%22">Hong SS</searchLink>; Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Saltz+JH%22">Saltz JH</searchLink>; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York, USA.<br /><searchLink fieldCode="AU" term="%22Schaffter+T%22">Schaffter T</searchLink>; Sage Bionetwork, Seattle, Washington, USA.<br /><searchLink fieldCode="AU" term="%22Pfaff+E%22">Pfaff E</searchLink>; Department of Medicine, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, USA.<br /><searchLink fieldCode="AU" term="%22Chute+CG%22">Chute CG</searchLink>; Department of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Duong+T%22">Duong T</searchLink>; Department of Radiology, Albert Einstein College of Medicine, Bronx, New York, USA.<br /><searchLink fieldCode="AU" term="%22Haendel+MA%22">Haendel MA</searchLink>; Center for Health AI, University of Colorado Anschutz Medical Campus, Denver, Colorado, USA.<br /><searchLink fieldCode="AU" term="%22Fuentes+R%22">Fuentes R</searchLink>; Alex Informatics, North Bethesda, Maryland, USA.<br /><searchLink fieldCode="AU" term="%22Szolovits+P%22">Szolovits P</searchLink>; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.<br /><searchLink fieldCode="AU" term="%22Xu+H%22">Xu H</searchLink>; School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.<br /><searchLink fieldCode="AU" term="%22Liu+H%22">Liu H</searchLink>; Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, Minnesota, USA.; School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
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