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An emerging clade of Chikungunya West African genotype discovered in real-time during 2023 outbreak in Senegal.

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Title: An emerging clade of Chikungunya West African genotype discovered in real-time during 2023 outbreak in Senegal.
Authors: Padane A; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Tegally H; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Ramphal Y; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Seyni N; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Sarr M; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diop MM; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diedhiou CK; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Mboup A; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diouf ND; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Souaré A; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diagne ND; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Aza-Gnandji M; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Dabo NA; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Dia YA; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diaw NA; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Leye N; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diaw PA; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Ahouidi A; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Cissé B; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diallo AS; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diop O; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Diallo AA; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Ndoye S; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal., Sanko TJ; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Baxter C; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Wilkinson E; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., San JE; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Tshabuila D; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Naidoo Y; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Pillay S; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa., Lessells R; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa., Cissé K; District of Kédougou, Kédougou, Senegal., Leye A; District of Kédougou, Kédougou, Senegal., Mbaye KA; District of Kédougou, Kédougou, Senegal., Kania D; Centre MURAZ,Bobo-Dioulasso, Burkina Faso., Tinto B; Centre MURAZ,Bobo-Dioulasso, Burkina Faso., Traoré I; Centre MURAZ,Bobo-Dioulasso, Burkina Faso., Kagone ST; Centre MURAZ,Bobo-Dioulasso, Burkina Faso., Ouedraogo AS; Centre MURAZ,Bobo-Dioulasso, Burkina Faso., Gifford RJ; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa., Lourenço J; Universidade Católica Portuguesa, Faculty of Medicine, Biomedical Research Centre, Lisbon, Portugal., Giovanetti M; Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil., Giandhari J; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa., de Oliveira T; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa., Mboup S; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.
Source: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Nov 15. Date of Electronic Publication: 2023 Nov 15.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
FullText Text:
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PubType: Academic Journal
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Items – Name: Title
  Label: Title
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  Data: An emerging clade of Chikungunya West African genotype discovered in real-time during 2023 outbreak in Senegal.
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  Data: <searchLink fieldCode="AU" term="%22Padane+A%22">Padane A</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Tegally+H%22">Tegally H</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Ramphal+Y%22">Ramphal Y</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Seyni+N%22">Seyni N</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Sarr+M%22">Sarr M</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diop+MM%22">Diop MM</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diedhiou+CK%22">Diedhiou CK</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Mboup+A%22">Mboup A</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diouf+ND%22">Diouf ND</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Souaré+A%22">Souaré A</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diagne+ND%22">Diagne ND</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Aza-Gnandji+M%22">Aza-Gnandji M</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Dabo+NA%22">Dabo NA</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Dia+YA%22">Dia YA</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diaw+NA%22">Diaw NA</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Leye+N%22">Leye N</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diaw+PA%22">Diaw PA</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Ahouidi+A%22">Ahouidi A</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Cissé+B%22">Cissé B</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diallo+AS%22">Diallo AS</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diop+O%22">Diop O</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diallo+AA%22">Diallo AA</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Ndoye+S%22">Ndoye S</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Sanko+TJ%22">Sanko TJ</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Baxter+C%22">Baxter C</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Wilkinson+E%22">Wilkinson E</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22San+JE%22">San JE</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Tshabuila+D%22">Tshabuila D</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Naidoo+Y%22">Naidoo Y</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Pillay+S%22">Pillay S</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.<br /><searchLink fieldCode="AU" term="%22Lessells+R%22">Lessells R</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.<br /><searchLink fieldCode="AU" term="%22Cissé+K%22">Cissé K</searchLink>; District of Kédougou, Kédougou, Senegal.<br /><searchLink fieldCode="AU" term="%22Leye+A%22">Leye A</searchLink>; District of Kédougou, Kédougou, Senegal.<br /><searchLink fieldCode="AU" term="%22Mbaye+KA%22">Mbaye KA</searchLink>; District of Kédougou, Kédougou, Senegal.<br /><searchLink fieldCode="AU" term="%22Kania+D%22">Kania D</searchLink>; Centre MURAZ,Bobo-Dioulasso, Burkina Faso.<br /><searchLink fieldCode="AU" term="%22Tinto+B%22">Tinto B</searchLink>; Centre MURAZ,Bobo-Dioulasso, Burkina Faso.<br /><searchLink fieldCode="AU" term="%22Traoré+I%22">Traoré I</searchLink>; Centre MURAZ,Bobo-Dioulasso, Burkina Faso.<br /><searchLink fieldCode="AU" term="%22Kagone+ST%22">Kagone ST</searchLink>; Centre MURAZ,Bobo-Dioulasso, Burkina Faso.<br /><searchLink fieldCode="AU" term="%22Ouedraogo+AS%22">Ouedraogo AS</searchLink>; Centre MURAZ,Bobo-Dioulasso, Burkina Faso.<br /><searchLink fieldCode="AU" term="%22Gifford+RJ%22">Gifford RJ</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.<br /><searchLink fieldCode="AU" term="%22Lourenço+J%22">Lourenço J</searchLink>; Universidade Católica Portuguesa, Faculty of Medicine, Biomedical Research Centre, Lisbon, Portugal.<br /><searchLink fieldCode="AU" term="%22Giovanetti+M%22">Giovanetti M</searchLink>; Instituto Rene Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.<br /><searchLink fieldCode="AU" term="%22Giandhari+J%22">Giandhari J</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.<br /><searchLink fieldCode="AU" term="%22de+Oliveira+T%22">de Oliveira T</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch 7600, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban 4001, South Africa.<br /><searchLink fieldCode="AU" term="%22Mboup+S%22">Mboup S</searchLink>; Institut de Recherche en Santé, de Surveillance Épidémiologique et de Formation (IRESSEF), Dakar, Senegal.
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