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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics.

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Title: Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics.
Authors: Grones C; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium., Eekhout T; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.; VIB Single Cell Core Facility, Ghent 9052, Belgium., Shi D; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany.; Institute of Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany., Neumann M; Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Berg LS; Institute of Plant Sciences, University of Bern, 3012 Bern, Switzerland., Ke Y; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium., Shahan R; Department of Biology, Duke University, Durham, NC 27708, USA.; Howard Hughes Medical Institute, Duke University, Durham, NC 27708, USA., Cox KL Jr; Donald Danforth Plant Science Center, St. Louis, MO 63132, USA., Gomez-Cano F; Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA., Nelissen H; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium., Lohmann JU; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany., Giacomello S; SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, 17165 Solna, Sweden., Martin OC; Universities of Paris-Saclay, Paris-Cité and Evry, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay, Gif-sur-Yvette 91192, France., Cole B; DOE-Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Wang JW; National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences (CEMPS), Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai 200032, China., Kaufmann K; Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany., Raissig MT; Institute of Plant Sciences, University of Bern, 3012 Bern, Switzerland., Palfalvi G; Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany., Greb T; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany., Libault M; Division of Plant Science and Technology, Interdisciplinary Plant Group, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65201, USA., De Rybel B; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.
Source: The Plant cell [Plant Cell] 2024 Mar 29; Vol. 36 (4), pp. 812-828.
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9208688 Publication Model: Print Cited Medium: Internet ISSN: 1532-298X (Electronic) Linking ISSN: 10404651 NLM ISO Abbreviation: Plant Cell Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Grones+C%22">Grones C</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.<br /><searchLink fieldCode="AU" term="%22Eekhout+T%22">Eekhout T</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.; VIB Single Cell Core Facility, Ghent 9052, Belgium.<br /><searchLink fieldCode="AU" term="%22Shi+D%22">Shi D</searchLink>; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany.; Institute of Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany.<br /><searchLink fieldCode="AU" term="%22Neumann+M%22">Neumann M</searchLink>; Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Berg+LS%22">Berg LS</searchLink>; Institute of Plant Sciences, University of Bern, 3012 Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Ke+Y%22">Ke Y</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.<br /><searchLink fieldCode="AU" term="%22Shahan+R%22">Shahan R</searchLink>; Department of Biology, Duke University, Durham, NC 27708, USA.; Howard Hughes Medical Institute, Duke University, Durham, NC 27708, USA.<br /><searchLink fieldCode="AU" term="%22Cox+KL+Jr%22">Cox KL Jr</searchLink>; Donald Danforth Plant Science Center, St. Louis, MO 63132, USA.<br /><searchLink fieldCode="AU" term="%22Gomez-Cano+F%22">Gomez-Cano F</searchLink>; Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.<br /><searchLink fieldCode="AU" term="%22Nelissen+H%22">Nelissen H</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.<br /><searchLink fieldCode="AU" term="%22Lohmann+JU%22">Lohmann JU</searchLink>; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Giacomello+S%22">Giacomello S</searchLink>; SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, 17165 Solna, Sweden.<br /><searchLink fieldCode="AU" term="%22Martin+OC%22">Martin OC</searchLink>; Universities of Paris-Saclay, Paris-Cité and Evry, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay, Gif-sur-Yvette 91192, France.<br /><searchLink fieldCode="AU" term="%22Cole+B%22">Cole B</searchLink>; DOE-Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.<br /><searchLink fieldCode="AU" term="%22Wang+JW%22">Wang JW</searchLink>; National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences (CEMPS), Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai 200032, China.<br /><searchLink fieldCode="AU" term="%22Kaufmann+K%22">Kaufmann K</searchLink>; Institute of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Raissig+MT%22">Raissig MT</searchLink>; Institute of Plant Sciences, University of Bern, 3012 Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Palfalvi+G%22">Palfalvi G</searchLink>; Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.<br /><searchLink fieldCode="AU" term="%22Greb+T%22">Greb T</searchLink>; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Libault+M%22">Libault M</searchLink>; Division of Plant Science and Technology, Interdisciplinary Plant Group, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65201, USA.<br /><searchLink fieldCode="AU" term="%22De+Rybel+B%22">De Rybel B</searchLink>; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.; VIB Centre for Plant Systems Biology, Ghent 9052, Belgium.
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