Packaging and containerization of computational methods.

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Title: Packaging and containerization of computational methods.
Authors: Alser M; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland., Lawlor B; Department of Computer Science, Munster Technological University, Cork, Ireland.; Department of Biological Sciences, Munster Technological University, Cork, Ireland., Abdill RJ; Section of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL, USA., Waymost S; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA., Ayyala R; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.; Titus Family Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Rajkumar N; Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, USA., LaPierre N; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Human Genetics, University of Chicago, Chicago, IL, USA., Brito J; Titus Family Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Ribeiro-Dos-Santos AM; Institute for Systems Genetics, NYU Grossman School of Medicine, New York, NY, USA., Almadhoun N; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland., Sarwal V; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA., Firtina C; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland., Osinski T; Center for Advanced Research Computing, University of Southern California, Los Angeles, CA, USA., Eskin E; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Computational Medicine, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Human Genetics, University of California, Los Angeles, CA, USA., Hu Q; Office of Advanced Research Computing, University of California, Los Angeles, CA, USA., Strong D; Center for Advanced Research Computing, University of Southern California, Los Angeles, CA, USA., Kim BBD; Center for Advanced Research Computing, University of Southern California, Los Angeles, CA, USA., Abedalthagafi MS; Department of Pathology & Laboratory Medicine, Emory University Hospital, Atlanta, GA, USA.; King Salman Center for Disability Research, Riyadh, Saudi Arabia., Mutlu O; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland., Mangul S; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA. serghei.mangul@gmail.com.; Titus Family Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA. serghei.mangul@gmail.com.
Source: Nature protocols [Nat Protoc] 2024 Sep; Vol. 19 (9), pp. 2529-2539. Date of Electronic Publication: 2024 Apr 02.
Publication Type: Journal Article; Systematic Review; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Alser+M%22">Alser M</searchLink>; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Lawlor+B%22">Lawlor B</searchLink>; Department of Computer Science, Munster Technological University, Cork, Ireland.; Department of Biological Sciences, Munster Technological University, Cork, Ireland.<br /><searchLink fieldCode="AU" term="%22Abdill+RJ%22">Abdill RJ</searchLink>; Section of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Waymost+S%22">Waymost S</searchLink>; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ayyala+R%22">Ayyala R</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.; Titus Family Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Rajkumar+N%22">Rajkumar N</searchLink>; Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22LaPierre+N%22">LaPierre N</searchLink>; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Human Genetics, University of Chicago, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Brito+J%22">Brito J</searchLink>; Titus Family Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ribeiro-Dos-Santos+AM%22">Ribeiro-Dos-Santos AM</searchLink>; Institute for Systems Genetics, NYU Grossman School of Medicine, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Almadhoun+N%22">Almadhoun N</searchLink>; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Sarwal+V%22">Sarwal V</searchLink>; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Firtina+C%22">Firtina C</searchLink>; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Osinski+T%22">Osinski T</searchLink>; Center for Advanced Research Computing, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Eskin+E%22">Eskin E</searchLink>; Department of Computer Science, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Computational Medicine, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Human Genetics, University of California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Hu+Q%22">Hu Q</searchLink>; Office of Advanced Research Computing, University of California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Strong+D%22">Strong D</searchLink>; Center for Advanced Research Computing, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Kim+BBD%22">Kim BBD</searchLink>; Center for Advanced Research Computing, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Abedalthagafi+MS%22">Abedalthagafi MS</searchLink>; Department of Pathology & Laboratory Medicine, Emory University Hospital, Atlanta, GA, USA.; King Salman Center for Disability Research, Riyadh, Saudi Arabia.<br /><searchLink fieldCode="AU" term="%22Mutlu+O%22">Mutlu O</searchLink>; Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Mangul+S%22">Mangul S</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA. serghei.mangul@gmail.com.; Titus Family Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA. serghei.mangul@gmail.com.
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  Data: <searchLink fieldCode="JN" term="%22101284307%22">Nature protocols</searchLink> [Nat Protoc] 2024 Sep; Vol. 19 (9), pp. 2529-2539. <i>Date of Electronic Publication: </i>2024 Apr 02.
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