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Annotation of nuclear lncRNAs based on chromatin interactions.

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Title: Annotation of nuclear lncRNAs based on chromatin interactions.
Authors: Agrawal S; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Buyan A; Autosome.org, Russia.; FANTOM Consortium, Dolgoprudny, Russia., Severin J; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Koido M; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Institute of Medical Science, The University of Tokyo, Tokyo, Japan., Alam T; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar., Abugessaisa I; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Chang HY; Center for Personal Dynamic Regulome, Stanford University, Stanford, California, United States of America., Dostie J; Department of Biochemistry, Rosalind and Morris Goodman Cancer Research Center, McGill University, Montréal, Québec, Canada., Itoh M; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Japan., Kere J; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.; Stem Cells and Metabolism Research Program, University of Helsinki and Folkhälsan Research Center, Helsinki, Finland., Kondo N; RIKEN Center for Life Science Technologies, Yokohama, Japan., Li Y; Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada., Makeev VJ; FANTOM Consortium, Dolgoprudny, Russia., Mendez M; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada., Okazaki Y; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Ramilowski JA; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Advanced Medical Research Center, Yokohama City University, Yokohama, Japan., Sigorskikh AI; FANTOM Consortium, Dolgoprudny, Russia., Strug LJ; Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.; Department of Statistical Sciences, University of Toronto, Ontario, Canada.; The Centre for Applied Genomics and Program in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada., Yagi K; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Yasuzawa K; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Yip CW; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Hon CC; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Hoffman MM; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.; Princess Margaret Cancer Centre, Toronto, Ontario, Canada.; Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.; Vector Institute, Toronto, Ontario, Canada., Terao C; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Kulakovskiy IV; Autosome.org, Russia.; FANTOM Consortium, Dolgoprudny, Russia., Kasukawa T; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Shin JW; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Republic of Singapore., Carninci P; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Human Technopole, Milan, Italy., de Hoon MJL; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Source: PloS one [PLoS One] 2024 May 06; Vol. 19 (5), pp. e0295971. Date of Electronic Publication: 2024 May 06 (Print Publication: 2024).
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
Database: MEDLINE Ultimate
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PubType: Academic Journal
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  Data: Annotation of nuclear lncRNAs based on chromatin interactions.
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  Data: <searchLink fieldCode="AU" term="%22Agrawal+S%22">Agrawal S</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Buyan+A%22">Buyan A</searchLink>; Autosome.org, Russia.; FANTOM Consortium, Dolgoprudny, Russia.<br /><searchLink fieldCode="AU" term="%22Severin+J%22">Severin J</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Koido+M%22">Koido M</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Institute of Medical Science, The University of Tokyo, Tokyo, Japan.<br /><searchLink fieldCode="AU" term="%22Alam+T%22">Alam T</searchLink>; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.<br /><searchLink fieldCode="AU" term="%22Abugessaisa+I%22">Abugessaisa I</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Chang+HY%22">Chang HY</searchLink>; Center for Personal Dynamic Regulome, Stanford University, Stanford, California, United States of America.<br /><searchLink fieldCode="AU" term="%22Dostie+J%22">Dostie J</searchLink>; Department of Biochemistry, Rosalind and Morris Goodman Cancer Research Center, McGill University, Montréal, Québec, Canada.<br /><searchLink fieldCode="AU" term="%22Itoh+M%22">Itoh M</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Japan.<br /><searchLink fieldCode="AU" term="%22Kere+J%22">Kere J</searchLink>; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.; Stem Cells and Metabolism Research Program, University of Helsinki and Folkhälsan Research Center, Helsinki, Finland.<br /><searchLink fieldCode="AU" term="%22Kondo+N%22">Kondo N</searchLink>; RIKEN Center for Life Science Technologies, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Li+Y%22">Li Y</searchLink>; Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.<br /><searchLink fieldCode="AU" term="%22Makeev+VJ%22">Makeev VJ</searchLink>; FANTOM Consortium, Dolgoprudny, Russia.<br /><searchLink fieldCode="AU" term="%22Mendez+M%22">Mendez M</searchLink>; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.<br /><searchLink fieldCode="AU" term="%22Okazaki+Y%22">Okazaki Y</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Ramilowski+JA%22">Ramilowski JA</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Advanced Medical Research Center, Yokohama City University, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Sigorskikh+AI%22">Sigorskikh AI</searchLink>; FANTOM Consortium, Dolgoprudny, Russia.<br /><searchLink fieldCode="AU" term="%22Strug+LJ%22">Strug LJ</searchLink>; Division of Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.; Department of Statistical Sciences, University of Toronto, Ontario, Canada.; The Centre for Applied Genomics and Program in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada.<br /><searchLink fieldCode="AU" term="%22Yagi+K%22">Yagi K</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Yasuzawa+K%22">Yasuzawa K</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Yip+CW%22">Yip CW</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Hon+CC%22">Hon CC</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Hoffman+MM%22">Hoffman MM</searchLink>; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.; Princess Margaret Cancer Centre, Toronto, Ontario, Canada.; Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.; Vector Institute, Toronto, Ontario, Canada.<br /><searchLink fieldCode="AU" term="%22Terao+C%22">Terao C</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Kulakovskiy+IV%22">Kulakovskiy IV</searchLink>; Autosome.org, Russia.; FANTOM Consortium, Dolgoprudny, Russia.<br /><searchLink fieldCode="AU" term="%22Kasukawa+T%22">Kasukawa T</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.<br /><searchLink fieldCode="AU" term="%22Shin+JW%22">Shin JW</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Republic of Singapore.<br /><searchLink fieldCode="AU" term="%22Carninci+P%22">Carninci P</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Human Technopole, Milan, Italy.<br /><searchLink fieldCode="AU" term="%22de+Hoon+MJL%22">de Hoon MJL</searchLink>; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
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  Data: <searchLink fieldCode="JN" term="%22101285081%22">PloS one</searchLink> [PLoS One] 2024 May 06; Vol. 19 (5), pp. e0295971. <i>Date of Electronic Publication: </i>2024 May 06 (<i>Print Publication: </i>2024).
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