Deep learning image analysis for filamentous fungi taxonomic classification: Dealing with small datasets with class imbalance and hierarchical grouping.
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| Title: | Deep learning image analysis for filamentous fungi taxonomic classification: Dealing with small datasets with class imbalance and hierarchical grouping. |
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| Authors: | Stiller S; Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg 15374, Germany.; Institute of Environmental Sciences, Brandenburg University of Technology Cottbus-Senftenberg (BTU), Cottbus 03046, Germany.; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany., Dueñas JF; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany., Hempel S; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany., Rillig MC; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany., Ryo M; Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg 15374, Germany.; Institute of Environmental Sciences, Brandenburg University of Technology Cottbus-Senftenberg (BTU), Cottbus 03046, Germany. |
| Source: | Biology methods & protocols [Biol Methods Protoc] 2024 Aug 27; Vol. 9 (1), pp. bpae063. Date of Electronic Publication: 2024 Aug 27 (Print Publication: 2024). |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Oxford University Press Country of Publication: England NLM ID: 101693064 Publication Model: eCollection Cited Medium: Internet ISSN: 2396-8923 (Electronic) Linking ISSN: 23968923 NLM ISO Abbreviation: Biol Methods Protoc Subsets: PubMed not MEDLINE |
| Database: | MEDLINE Ultimate |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 39258158 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Deep learning image analysis for filamentous fungi taxonomic classification: Dealing with small datasets with class imbalance and hierarchical grouping. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Stiller+S%22">Stiller S</searchLink>; Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg 15374, Germany.; Institute of Environmental Sciences, Brandenburg University of Technology Cottbus-Senftenberg (BTU), Cottbus 03046, Germany.; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.<br /><searchLink fieldCode="AU" term="%22Dueñas+JF%22">Dueñas JF</searchLink>; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany.<br /><searchLink fieldCode="AU" term="%22Hempel+S%22">Hempel S</searchLink>; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany.<br /><searchLink fieldCode="AU" term="%22Rillig+MC%22">Rillig MC</searchLink>; Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany.; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin 14195, Germany.<br /><searchLink fieldCode="AU" term="%22Ryo+M%22">Ryo M</searchLink>; Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg 15374, Germany.; Institute of Environmental Sciences, Brandenburg University of Technology Cottbus-Senftenberg (BTU), Cottbus 03046, Germany. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101693064%22">Biology methods & protocols</searchLink> [Biol Methods Protoc] 2024 Aug 27; Vol. 9 (1), pp. bpae063. <i>Date of Electronic Publication: </i>2024 Aug 27 (<i>Print Publication: </i>2024). – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Oxford+University+Press%22">Oxford University Press </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101693064 <i>Publication Model: </i>eCollection <i>Cited Medium: </i>Internet <i>ISSN: </i>2396-8923 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2223968923%22">23968923 </searchLink><i>NLM ISO Abbreviation: </i>Biol Methods Protoc <i>Subsets: </i>PubMed not MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=39258158 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1093/biomethods/bpae063 Languages: – Code: eng Text: English PhysicalDescription: Pagination: StartPage: bpae063 Titles: – TitleFull: Deep learning image analysis for filamentous fungi taxonomic classification: Dealing with small datasets with class imbalance and hierarchical grouping. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Stiller S – PersonEntity: Name: NameFull: Dueñas JF – PersonEntity: Name: NameFull: Hempel S – PersonEntity: Name: NameFull: Rillig MC – PersonEntity: Name: NameFull: Ryo M IsPartOfRelationships: – BibEntity: Dates: – D: 27 M: 08 Text: 2024 Aug 27 Type: published Y: 2024 Identifiers: – Type: issn-electronic Value: 2396-8923 Numbering: – Type: volume Value: 9 – Type: issue Value: 1 Titles: – TitleFull: Biology methods & protocols Type: main |
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