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A new lineage nomenclature to aid genomic surveillance of dengue virus.

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Title: A new lineage nomenclature to aid genomic surveillance of dengue virus.
Authors: Hill V; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Cleemput S; Emweb bv, Herent, Belgium., Pereira JS; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Gifford RJ; MRC-University of Glasgow Centre for Virus Research, Bearsden, Glasgow, United Kingdom.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Fonseca V; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Department of Exact and Earth Sciences, University of the State of Bahia, Salvador, Brazil., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa., Brito AF; Instituto Todos pela Saúde, São Paulo, Brazil., Ribeiro G; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., de Souza VC; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Brcko IC; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Ribeiro IS; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., De Lima ITT; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Slavov SN; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Sampaio SC; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Elias MC; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Tran VT; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam., Kien DTH; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam., Huynh T; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam., Yacoub S; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam., Dieng I; Arboviruses and Haemorrhagic Fever Viruses Unit, Virology Department, Institut Pasteur de Dakar, Dakar, Senegal., Salvato R; Centro Estadual de Vigilância em Saúde da Secretaria de Saúde do Estado do Rio Grande do Sul (CDCT/CEVS/SES-RS), Rio Grande do Sul, Brazil., Wallau GL; Departamento de Entomologia, Instituto Aggeu Magalhães (IAM)-Fundação Oswaldo Cruz-FIOCRUZ, Recife, Brazil.; Department of Arbovirology, Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Center for Arbovirus and Hemorrhagic Fever Reference, Hamburg, Germany.; National Reference Center for Tropical Infectious Diseases. Bernhard, Hamburg, Germany., Gregianini TS; Centro Estadual de Vigilância em Saúde da Secretaria de Saúde do Estado do Rio Grande do Sul (CDCT/CEVS/SES-RS), Rio Grande do Sul, Brazil., Godinho FMS; Centro Estadual de Vigilância em Saúde da Secretaria de Saúde do Estado do Rio Grande do Sul (CDCT/CEVS/SES-RS), Rio Grande do Sul, Brazil., Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Leguia M; Genomics Laboratory, Pontificia Universidad Católica del Peru, Lima, Peru., Jagtap S; Department of Chemical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India., Roy R; Department of Chemical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.; Center for BioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India., Hapuarachchi C; Environmental Health Institute, National Environment Agency, Singapore., Mwanyika G; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Department of Applied Sciences, Mbeya University of Science and Technology (MUST), Mbeya, Tanzania., Giovanetti M; Department of Sciences and Technologies for Sustainable Development and One Health, Universita Campus Bio-Medico di Roma, Roma, Italy.; Instituto René Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.; Climate Amplified Diseases and Epidemics (CLIMADE), Minas Gerais, Brazil., Alcantara LCJ; Instituto René Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.; Climate Amplified Diseases and Epidemics (CLIMADE), Minas Gerais, Brazil., Faria NR; MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom.; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Carrington CVF; Department of Preclinical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago., Hanley KA; Department of Biology, New Mexico State University, Las Cruces, New Mexico, United States of America., Holmes EC; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, Australia., Dumon W; Emweb bv, Herent, Belgium., Lima ARJ; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil., Oliveira T; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Department of Global Health, University of Washington, Seattle, Washington, United States of America., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, United States of America.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.
Source: PLoS biology [PLoS Biol] 2024 Sep 16; Vol. 22 (9), pp. e3002834. Date of Electronic Publication: 2024 Sep 16 (Print Publication: 2024).
Publication Type: Journal Article
Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE
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  Data: A new lineage nomenclature to aid genomic surveillance of dengue virus.
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  Data: <searchLink fieldCode="AU" term="%22Hill+V%22">Hill V</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.<br /><searchLink fieldCode="AU" term="%22Cleemput+S%22">Cleemput S</searchLink>; Emweb bv, Herent, Belgium.<br /><searchLink fieldCode="AU" term="%22Pereira+JS%22">Pereira JS</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Gifford+RJ%22">Gifford RJ</searchLink>; MRC-University of Glasgow Centre for Virus Research, Bearsden, Glasgow, United Kingdom.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.<br /><searchLink fieldCode="AU" term="%22Fonseca+V%22">Fonseca V</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Department of Exact and Earth Sciences, University of the State of Bahia, Salvador, Brazil.<br /><searchLink fieldCode="AU" term="%22Tegally+H%22">Tegally H</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Brito+AF%22">Brito AF</searchLink>; Instituto Todos pela Saúde, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Ribeiro+G%22">Ribeiro G</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22de+Souza+VC%22">de Souza VC</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Brcko+IC%22">Brcko IC</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Ribeiro+IS%22">Ribeiro IS</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22De+Lima+ITT%22">De Lima ITT</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Slavov+SN%22">Slavov SN</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Sampaio+SC%22">Sampaio SC</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Elias+MC%22">Elias MC</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Tran+VT%22">Tran VT</searchLink>; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.<br /><searchLink fieldCode="AU" term="%22Kien+DTH%22">Kien DTH</searchLink>; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.<br /><searchLink fieldCode="AU" term="%22Huynh+T%22">Huynh T</searchLink>; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.<br /><searchLink fieldCode="AU" term="%22Yacoub+S%22">Yacoub S</searchLink>; Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.<br /><searchLink fieldCode="AU" term="%22Dieng+I%22">Dieng I</searchLink>; Arboviruses and Haemorrhagic Fever Viruses Unit, Virology Department, Institut Pasteur de Dakar, Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Salvato+R%22">Salvato R</searchLink>; Centro Estadual de Vigilância em Saúde da Secretaria de Saúde do Estado do Rio Grande do Sul (CDCT/CEVS/SES-RS), Rio Grande do Sul, Brazil.<br /><searchLink fieldCode="AU" term="%22Wallau+GL%22">Wallau GL</searchLink>; Departamento de Entomologia, Instituto Aggeu Magalhães (IAM)-Fundação Oswaldo Cruz-FIOCRUZ, Recife, Brazil.; Department of Arbovirology, Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Center for Arbovirus and Hemorrhagic Fever Reference, Hamburg, Germany.; National Reference Center for Tropical Infectious Diseases. Bernhard, Hamburg, Germany.<br /><searchLink fieldCode="AU" term="%22Gregianini+TS%22">Gregianini TS</searchLink>; Centro Estadual de Vigilância em Saúde da Secretaria de Saúde do Estado do Rio Grande do Sul (CDCT/CEVS/SES-RS), Rio Grande do Sul, Brazil.<br /><searchLink fieldCode="AU" term="%22Godinho+FMS%22">Godinho FMS</searchLink>; Centro Estadual de Vigilância em Saúde da Secretaria de Saúde do Estado do Rio Grande do Sul (CDCT/CEVS/SES-RS), Rio Grande do Sul, Brazil.<br /><searchLink fieldCode="AU" term="%22Vogels+CBF%22">Vogels CBF</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.<br /><searchLink fieldCode="AU" term="%22Breban+MI%22">Breban MI</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.<br /><searchLink fieldCode="AU" term="%22Leguia+M%22">Leguia M</searchLink>; Genomics Laboratory, Pontificia Universidad Católica del Peru, Lima, Peru.<br /><searchLink fieldCode="AU" term="%22Jagtap+S%22">Jagtap S</searchLink>; Department of Chemical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.<br /><searchLink fieldCode="AU" term="%22Roy+R%22">Roy R</searchLink>; Department of Chemical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.; Center for BioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.<br /><searchLink fieldCode="AU" term="%22Hapuarachchi+C%22">Hapuarachchi C</searchLink>; Environmental Health Institute, National Environment Agency, Singapore.<br /><searchLink fieldCode="AU" term="%22Mwanyika+G%22">Mwanyika G</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Department of Applied Sciences, Mbeya University of Science and Technology (MUST), Mbeya, Tanzania.<br /><searchLink fieldCode="AU" term="%22Giovanetti+M%22">Giovanetti M</searchLink>; Department of Sciences and Technologies for Sustainable Development and One Health, Universita Campus Bio-Medico di Roma, Roma, Italy.; Instituto René Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.; Climate Amplified Diseases and Epidemics (CLIMADE), Minas Gerais, Brazil.<br /><searchLink fieldCode="AU" term="%22Alcantara+LCJ%22">Alcantara LCJ</searchLink>; Instituto René Rachou, Fundação Oswaldo Cruz, Minas Gerais, Brazil.; Climate Amplified Diseases and Epidemics (CLIMADE), Minas Gerais, Brazil.<br /><searchLink fieldCode="AU" term="%22Faria+NR%22">Faria NR</searchLink>; MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom.; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Carrington+CVF%22">Carrington CVF</searchLink>; Department of Preclinical Sciences, The University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and Tobago.<br /><searchLink fieldCode="AU" term="%22Hanley+KA%22">Hanley KA</searchLink>; Department of Biology, New Mexico State University, Las Cruces, New Mexico, United States of America.<br /><searchLink fieldCode="AU" term="%22Holmes+EC%22">Holmes EC</searchLink>; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, Australia.<br /><searchLink fieldCode="AU" term="%22Dumon+W%22">Dumon W</searchLink>; Emweb bv, Herent, Belgium.<br /><searchLink fieldCode="AU" term="%22Lima+ARJ%22">Lima ARJ</searchLink>; Centro para Vigilância Viral e Avaliação Sorológica (CeVIVAS), Instituto Butantan, São Paulo, Brazil.<br /><searchLink fieldCode="AU" term="%22Oliveira+T%22">Oliveira T</searchLink>; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.; Department of Global Health, University of Washington, Seattle, Washington, United States of America.<br /><searchLink fieldCode="AU" term="%22Grubaugh+ND%22">Grubaugh ND</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, United States of America.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.
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