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Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.

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Title: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Authors: Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA; sergey.koren@nih.gov adam.phillippy@nih.gov., Bao Z; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Baden-Württemberg, Germany.; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China., Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA., Ou S; Department of Molecular Genetics, Ohio State University, Columbus, Ohio 43210, USA., Goodwin S; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA., Jenike KM; Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA., Lucas J; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA., McNulty B; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA., Park J; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA., Rautiainen M; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA., Roelofs D; KeyGene, 6708 PW Wageningen, Netherlands., Schneiders H; KeyGene, 6708 PW Wageningen, Netherlands., Vrijenhoek I; KeyGene, 6708 PW Wageningen, Netherlands., Nijbroek K; KeyGene, 6708 PW Wageningen, Netherlands., Nordesjo O; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom., Nurk S; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom., Vella M; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom., Lawrence KR; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom., Ware D; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.; USDA ARS NEA Plant, Soil and Nutrition Laboratory Research Unit, Ithaca, New York 14853, USA., Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA., Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA., Huang S; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.; State Key Laboratory of Tropical Crop Breeding, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China., McCombie WR; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA., Miga KH; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA., Wittenberg AHJ; KeyGene, 6708 PW Wageningen, Netherlands., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA; sergey.koren@nih.gov adam.phillippy@nih.gov.
Source: Genome research [Genome Res] 2024 Nov 20; Vol. 34 (11), pp. 1919-1930. Date of Electronic Publication: 2024 Nov 20.
Publication Type: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Intramural; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
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  Data: <searchLink fieldCode="AU" term="%22Koren+S%22">Koren S</searchLink>; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA; sergey.koren@nih.gov adam.phillippy@nih.gov.<br /><searchLink fieldCode="AU" term="%22Bao+Z%22">Bao Z</searchLink>; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Baden-Württemberg, Germany.; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.<br /><searchLink fieldCode="AU" term="%22Guarracino+A%22">Guarracino A</searchLink>; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.<br /><searchLink fieldCode="AU" term="%22Ou+S%22">Ou S</searchLink>; Department of Molecular Genetics, Ohio State University, Columbus, Ohio 43210, USA.<br /><searchLink fieldCode="AU" term="%22Goodwin+S%22">Goodwin S</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.<br /><searchLink fieldCode="AU" term="%22Jenike+KM%22">Jenike KM</searchLink>; Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA.<br /><searchLink fieldCode="AU" term="%22Lucas+J%22">Lucas J</searchLink>; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA.<br /><searchLink fieldCode="AU" term="%22McNulty+B%22">McNulty B</searchLink>; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA.<br /><searchLink fieldCode="AU" term="%22Park+J%22">Park J</searchLink>; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA.<br /><searchLink fieldCode="AU" term="%22Rautiainen+M%22">Rautiainen M</searchLink>; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.<br /><searchLink fieldCode="AU" term="%22Rhie+A%22">Rhie A</searchLink>; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.<br /><searchLink fieldCode="AU" term="%22Roelofs+D%22">Roelofs D</searchLink>; KeyGene, 6708 PW Wageningen, Netherlands.<br /><searchLink fieldCode="AU" term="%22Schneiders+H%22">Schneiders H</searchLink>; KeyGene, 6708 PW Wageningen, Netherlands.<br /><searchLink fieldCode="AU" term="%22Vrijenhoek+I%22">Vrijenhoek I</searchLink>; KeyGene, 6708 PW Wageningen, Netherlands.<br /><searchLink fieldCode="AU" term="%22Nijbroek+K%22">Nijbroek K</searchLink>; KeyGene, 6708 PW Wageningen, Netherlands.<br /><searchLink fieldCode="AU" term="%22Nordesjo+O%22">Nordesjo O</searchLink>; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Nurk+S%22">Nurk S</searchLink>; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Vella+M%22">Vella M</searchLink>; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Lawrence+KR%22">Lawrence KR</searchLink>; Oxford Nanopore Technologies, Oxford OX4 4DQ, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Ware+D%22">Ware D</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.; USDA ARS NEA Plant, Soil and Nutrition Laboratory Research Unit, Ithaca, New York 14853, USA.<br /><searchLink fieldCode="AU" term="%22Schatz+MC%22">Schatz MC</searchLink>; Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA.<br /><searchLink fieldCode="AU" term="%22Garrison+E%22">Garrison E</searchLink>; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.<br /><searchLink fieldCode="AU" term="%22Huang+S%22">Huang S</searchLink>; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.; State Key Laboratory of Tropical Crop Breeding, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China.<br /><searchLink fieldCode="AU" term="%22McCombie+WR%22">McCombie WR</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.<br /><searchLink fieldCode="AU" term="%22Miga+KH%22">Miga KH</searchLink>; Genomics Institute, University of California Santa Cruz, Santa Cruz, California 95060, USA.<br /><searchLink fieldCode="AU" term="%22Wittenberg+AHJ%22">Wittenberg AHJ</searchLink>; KeyGene, 6708 PW Wageningen, Netherlands.<br /><searchLink fieldCode="AU" term="%22Phillippy+AM%22">Phillippy AM</searchLink>; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA; sergey.koren@nih.gov adam.phillippy@nih.gov.
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  Data: <searchLink fieldCode="JN" term="%229518021%22">Genome research</searchLink> [Genome Res] 2024 Nov 20; Vol. 34 (11), pp. 1919-1930. <i>Date of Electronic Publication: </i>2024 Nov 20.
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  Data: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Intramural; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Cold+Spring+Harbor+Laboratory+Press%22">Cold Spring Harbor Laboratory Press </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9518021 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1549-5469 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2210889051%22">10889051 </searchLink><i>NLM ISO Abbreviation: </i>Genome Res <i>Subsets: </i>MEDLINE
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