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Reproducible image-based profiling with Pycytominer.

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Title: Reproducible image-based profiling with Pycytominer.
Authors: Serrano E; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA., Chandrasekaran SN; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Bunten D; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA., Brewer KI; Independent Researcher, San Francisco, CA, USA., Tomkinson J; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA., Kern R; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.; Case Western Reserve University, Cleveland, OH, USA., Bornholdt M; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Fleming SJ; Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Pei R; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Arevalo J; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Tsang H; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Rubinetti V; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA., Tromans-Coia C; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Becker T; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Weisbart E; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Bunne C; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Kalinin AA; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Senft R; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Taylor SJ; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA., Jamali N; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Adeboye A; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Abbasi HS; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Goodman A; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Genentech gRED, South San Francisco, CA, USA., Caicedo JC; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Morgridge Institute for Research, University of Wisconsin-Madison, Madison, WI, USA., Carpenter AE; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Cimini BA; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Singh S; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA. shantanu@broadinstitute.org., Way GP; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA. gregory.way@cuanschutz.edu.
Source: Nature methods [Nat Methods] 2025 Apr; Vol. 22 (4), pp. 677-680. Date of Electronic Publication: 2025 Mar 03.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
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  Data: Reproducible image-based profiling with Pycytominer.
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  Data: <searchLink fieldCode="AU" term="%22Serrano+E%22">Serrano E</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22Chandrasekaran+SN%22">Chandrasekaran SN</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Bunten+D%22">Bunten D</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22Brewer+KI%22">Brewer KI</searchLink>; Independent Researcher, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Tomkinson+J%22">Tomkinson J</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22Kern+R%22">Kern R</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.; Case Western Reserve University, Cleveland, OH, USA.<br /><searchLink fieldCode="AU" term="%22Bornholdt+M%22">Bornholdt M</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Fleming+SJ%22">Fleming SJ</searchLink>; Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Pei+R%22">Pei R</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Arevalo+J%22">Arevalo J</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Tsang+H%22">Tsang H</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Rubinetti+V%22">Rubinetti V</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22Tromans-Coia+C%22">Tromans-Coia C</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Becker+T%22">Becker T</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Weisbart+E%22">Weisbart E</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Bunne+C%22">Bunne C</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Kalinin+AA%22">Kalinin AA</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Senft+R%22">Senft R</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Taylor+SJ%22">Taylor SJ</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22Jamali+N%22">Jamali N</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Adeboye+A%22">Adeboye A</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Abbasi+HS%22">Abbasi HS</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Goodman+A%22">Goodman A</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Genentech gRED, South San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Caicedo+JC%22">Caicedo JC</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Morgridge Institute for Research, University of Wisconsin-Madison, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Carpenter+AE%22">Carpenter AE</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Cimini+BA%22">Cimini BA</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Singh+S%22">Singh S</searchLink>; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA. shantanu@broadinstitute.org.<br /><searchLink fieldCode="AU" term="%22Way+GP%22">Way GP</searchLink>; Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, USA. gregory.way@cuanschutz.edu.
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  Data: <searchLink fieldCode="JN" term="%22101215604%22">Nature methods</searchLink> [Nat Methods] 2025 Apr; Vol. 22 (4), pp. 677-680. <i>Date of Electronic Publication: </i>2025 Mar 03.
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