View in EDS

Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D.

Saved in:
Bibliographic Details
Title: Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D.
Authors: Chen Y; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China.; Guangdong Key Laboratory of Liver Disease Research, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China.; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China., Lin ZB; Guangdong Key Laboratory of Liver Disease Research, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China., Wang SK; David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada., Wu B; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China., Niu L; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China., Zhong JY; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China., Sun YM; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China., Zheng Z; Department of Computer Science, The University of Hong Kong, Hong Kong, China., Bai X; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China., Liu LR; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China., Xie W; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, China., Chi W; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China., Ye T; Xianghu Laboratory, Hangzhou, China. yetiantian@xhlab.ac.cn., Luo R; Department of Computer Science, The University of Hong Kong, Hong Kong, China. rbluo@cs.hku.hk., Hou C; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. houchunhui@mail.kiz.ac.cn., Luo F; School of Computing, Clemson University, Clemson, SC, USA. luofeng@clemson.edu., Xiao CL; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China. xiaochuanle@126.com.
Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2025 Jul; Vol. 32 (7), pp. 1305-1317. Date of Electronic Publication: 2025 Mar 04.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
FullText Text:
  Availability: 0
Header DbId: mdl
DbLabel: MEDLINE Ultimate
An: 40038455
AccessLevel: 2
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Chen+Y%22">Chen Y</searchLink>; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China.; Guangdong Key Laboratory of Liver Disease Research, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China.; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China.<br /><searchLink fieldCode="AU" term="%22Lin+ZB%22">Lin ZB</searchLink>; Guangdong Key Laboratory of Liver Disease Research, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China.<br /><searchLink fieldCode="AU" term="%22Wang+SK%22">Wang SK</searchLink>; David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada.<br /><searchLink fieldCode="AU" term="%22Wu+B%22">Wu B</searchLink>; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China.<br /><searchLink fieldCode="AU" term="%22Niu+L%22">Niu L</searchLink>; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China.<br /><searchLink fieldCode="AU" term="%22Zhong+JY%22">Zhong JY</searchLink>; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China.<br /><searchLink fieldCode="AU" term="%22Sun+YM%22">Sun YM</searchLink>; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China.<br /><searchLink fieldCode="AU" term="%22Zheng+Z%22">Zheng Z</searchLink>; Department of Computer Science, The University of Hong Kong, Hong Kong, China.<br /><searchLink fieldCode="AU" term="%22Bai+X%22">Bai X</searchLink>; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China.<br /><searchLink fieldCode="AU" term="%22Liu+LR%22">Liu LR</searchLink>; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China.<br /><searchLink fieldCode="AU" term="%22Xie+W%22">Xie W</searchLink>; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, China.<br /><searchLink fieldCode="AU" term="%22Chi+W%22">Chi W</searchLink>; Shenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China.<br /><searchLink fieldCode="AU" term="%22Ye+T%22">Ye T</searchLink>; Xianghu Laboratory, Hangzhou, China. yetiantian@xhlab.ac.cn.<br /><searchLink fieldCode="AU" term="%22Luo+R%22">Luo R</searchLink>; Department of Computer Science, The University of Hong Kong, Hong Kong, China. rbluo@cs.hku.hk.<br /><searchLink fieldCode="AU" term="%22Hou+C%22">Hou C</searchLink>; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. houchunhui@mail.kiz.ac.cn.<br /><searchLink fieldCode="AU" term="%22Luo+F%22">Luo F</searchLink>; School of Computing, Clemson University, Clemson, SC, USA. luofeng@clemson.edu.<br /><searchLink fieldCode="AU" term="%22Xiao+CL%22">Xiao CL</searchLink>; State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science, Guangzhou, China. xiaochuanle@126.com.
– Name: TitleSource
  Label: Source
  Group: Src
  Data: <searchLink fieldCode="JN" term="%22101186374%22">Nature structural & molecular biology</searchLink> [Nat Struct Mol Biol] 2025 Jul; Vol. 32 (7), pp. 1305-1317. <i>Date of Electronic Publication: </i>2025 Mar 04.
– Name: TypePub
  Label: Publication Type
  Group: TypPub
  Data: Journal Article
– Name: TitleSource
  Label: Journal Info
  Group: Src
  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Nature+Pub%2E+Group%22">Nature Pub. Group </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>101186374 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1545-9985 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2215459985%22">15459985 </searchLink><i>NLM ISO Abbreviation: </i>Nat Struct Mol Biol <i>Subsets: </i>MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=40038455
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1038/s41594-025-01512-w
    Languages:
      – Code: eng
        Text: English
    PhysicalDescription:
      Pagination:
        StartPage: 1305
    Titles:
      – TitleFull: Reconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Chen Y
      – PersonEntity:
          Name:
            NameFull: Lin ZB
      – PersonEntity:
          Name:
            NameFull: Wang SK
      – PersonEntity:
          Name:
            NameFull: Wu B
      – PersonEntity:
          Name:
            NameFull: Niu L
      – PersonEntity:
          Name:
            NameFull: Zhong JY
      – PersonEntity:
          Name:
            NameFull: Sun YM
      – PersonEntity:
          Name:
            NameFull: Zheng Z
      – PersonEntity:
          Name:
            NameFull: Bai X
      – PersonEntity:
          Name:
            NameFull: Liu LR
      – PersonEntity:
          Name:
            NameFull: Xie W
      – PersonEntity:
          Name:
            NameFull: Chi W
      – PersonEntity:
          Name:
            NameFull: Ye T
      – PersonEntity:
          Name:
            NameFull: Luo R
      – PersonEntity:
          Name:
            NameFull: Hou C
      – PersonEntity:
          Name:
            NameFull: Luo F
      – PersonEntity:
          Name:
            NameFull: Xiao CL
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 01
              M: 07
              Text: 2025 Jul
              Type: published
              Y: 2025
          Identifiers:
            – Type: issn-electronic
              Value: 1545-9985
          Numbering:
            – Type: volume
              Value: 32
            – Type: issue
              Value: 7
          Titles:
            – TitleFull: Nature structural & molecular biology
              Type: main
ResultId 1