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Solanum pan-genetics reveals paralogues as contingencies in crop engineering.

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Title: Solanum pan-genetics reveals paralogues as contingencies in crop engineering.
Authors: Benoit M; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France., Jenike KM; Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Satterlee JW; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Ramakrishnan S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Gentile I; School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Hendelman A; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Passalacqua MJ; School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Suresh H; School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Shohat H; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Robitaille GM; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Fitzgerald B; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Alonge M; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.; Ohalo Genetics, Aptos, CA, USA., Wang X; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Ohalo Genetics, Aptos, CA, USA., Santos R; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Verve Therapeutics, Boston, MA, USA., He J; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Ou S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.; Department of Molecular Genetics, Ohio State University, Columbus, OH, USA., Golan H; SiteKicks.ai, Setauket, NY, USA., Green Y; Boyce Thompson Institute, Ithaca, NY, USA., Swartwood K; Boyce Thompson Institute, Ithaca, NY, USA., Karavolias NG; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Sierra GP; Max Planck Tandem Group, Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia., Orejuela A; Departamento de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Cartagena, Cartagena de Indias, Colombia., Roda F; Max Planck Tandem Group, Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia., Goodwin S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., McCombie WR; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Kizito EB; Faculty of Agricultural Sciences, Uganda Christian University, Mukono, Uganda., Gagnon E; Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.; Royal Botanic Garden Edinburgh, Edinburgh, UK.; School of Life Sciences, Technical University of Munich, Freising, Germany., Knapp S; Natural History Museum, London, UK., Särkinen TE; Royal Botanic Garden Edinburgh, Edinburgh, UK., Frary A; Department of Biological Sciences, Mount Holyoke College, South Hadley, MA, USA., Gillis J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. jesse.gillis@utoronto.ca.; Physiology Department and Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada. jesse.gillis@utoronto.ca., Van Eck J; Boyce Thompson Institute, Ithaca, NY, USA. jv27@cornell.edu.; Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA. jv27@cornell.edu., Schatz MC; Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, MD, USA. mschatz@cs.jhu.edu.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA. mschatz@cs.jhu.edu., Lippman ZB; Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. lippman@cshl.edu.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. lippman@cshl.edu.; School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. lippman@cshl.edu.
Source: Nature [Nature] 2025 Apr; Vol. 640 (8057), pp. 135-145. Date of Electronic Publication: 2025 Mar 05.
Publication Type: Journal Article; Research Support, N.I.H., Intramural
Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE
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