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Evaluating cell type deconvolution in FFPE breast tissue: application to benign breast disease.

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Title: Evaluating cell type deconvolution in FFPE breast tissue: application to benign breast disease.
Authors: Liu Y; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA., Vierkant RA; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA., Bhagwate A; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA., Jons WA; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.; Biomedical Engineering and Physiology Graduate Program, Mayo Clinic Graduate School of Biomedical Sciences, Rochester, MN 55905, USA., Stallings-Mann ML; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA., McCauley BM; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA., Carter JM; Department of Laboratory Medicine & Pathology, University of Alberta, Edmonton, AB T6G 2R3, Canada., Stephens MT; Genomics and Bioinformatics Core Facility, University of Notre Dame, Notre Dame, IN 46556, USA., Pfrender ME; Department of Biological Sciences, 109B Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA., Littlepage LE; Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN 46556, USA., Radisky DC; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA., Cunningham JM; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN 55905, USA., Degnim AC; Department of Surgery, Mayo Clinic, 200 1st Street SW, Rochester, MN 55905, USA., Winham SJ; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA., Wang C; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.
Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2024 Aug 06; Vol. 6 (3), pp. lqae098. Date of Electronic Publication: 2024 Aug 06 (Print Publication: 2024).
Publication Type: Journal Article; Review
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Evaluating cell type deconvolution in FFPE breast tissue: application to benign breast disease.
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  Data: <searchLink fieldCode="AU" term="%22Liu+Y%22">Liu Y</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Vierkant+RA%22">Vierkant RA</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Bhagwate+A%22">Bhagwate A</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Jons+WA%22">Jons WA</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.; Biomedical Engineering and Physiology Graduate Program, Mayo Clinic Graduate School of Biomedical Sciences, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Stallings-Mann+ML%22">Stallings-Mann ML</searchLink>; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA.<br /><searchLink fieldCode="AU" term="%22McCauley+BM%22">McCauley BM</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Carter+JM%22">Carter JM</searchLink>; Department of Laboratory Medicine & Pathology, University of Alberta, Edmonton, AB T6G 2R3, Canada.<br /><searchLink fieldCode="AU" term="%22Stephens+MT%22">Stephens MT</searchLink>; Genomics and Bioinformatics Core Facility, University of Notre Dame, Notre Dame, IN 46556, USA.<br /><searchLink fieldCode="AU" term="%22Pfrender+ME%22">Pfrender ME</searchLink>; Department of Biological Sciences, 109B Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA.<br /><searchLink fieldCode="AU" term="%22Littlepage+LE%22">Littlepage LE</searchLink>; Department of Chemistry and Biochemistry, Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN 46556, USA.<br /><searchLink fieldCode="AU" term="%22Radisky+DC%22">Radisky DC</searchLink>; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA.<br /><searchLink fieldCode="AU" term="%22Cunningham+JM%22">Cunningham JM</searchLink>; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Degnim+AC%22">Degnim AC</searchLink>; Department of Surgery, Mayo Clinic, 200 1st Street SW, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Winham+SJ%22">Winham SJ</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.<br /><searchLink fieldCode="AU" term="%22Wang+C%22">Wang C</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Oxford+University+Press%22">Oxford University Press </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101756213 <i>Publication Model: </i>eCollection <i>Cited Medium: </i>Internet <i>ISSN: </i>2631-9268 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226319268%22">26319268 </searchLink><i>NLM ISO Abbreviation: </i>NAR Genom Bioinform <i>Subsets: </i>MEDLINE
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