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Single-cell analysis reveals immune cell abnormalities underlying the clinical heterogeneity of patients with systemic sclerosis.

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Title: Single-cell analysis reveals immune cell abnormalities underlying the clinical heterogeneity of patients with systemic sclerosis.
Authors: Shimagami H; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Nishimura K; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan., Matsushita H; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan., Metsugi S; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan., Kato Y; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Kawasaki T; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Tsujimoto K; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Edahiro R; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Statistical Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Laboratory for Systems Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan., Itotagawa E; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Naito M; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Kawada S; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Nakatsubo D; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Matsukawa K; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Namba-Hamano T; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Inoue K; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Takahashi A; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Mizui M; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Kato S; Department of Gastroenterology and Hepatology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Hikita H; Department of Gastroenterology and Hepatology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Nakazawa S; Department of Urology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Kakuta Y; Department of Urology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Konaka H; Nippon Life Hospital, Osaka, Japan., Mitsumoto K; Nippon Life Hospital, Osaka, Japan., Ishikawa N; Osaka International Medical & Science Center, Osaka, Japan., Fujimoto J; Osaka International Medical & Science Center, Osaka, Japan., Higa S; Osaka International Medical & Science Center, Osaka, Japan., Omiya R; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan., Isaka Y; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Takehara T; Department of Gastroenterology and Hepatology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Nonomura N; Department of Urology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Okada Y; Department of Statistical Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Laboratory for Systems Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.; Integrated Frontier Research for Medical Science Division, Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka, Japan.; Statistical Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Genome Informatics, Graduate School of Medicine, the University of Tokyo, Bunkyo-ku, Tokyo, Japan.; Japan Agency for Medical Research and Development - Core Research for Evolutional Science and Technology (AMED-CREST), Osaka University, Suita, Osaka, Japan., Hattori K; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan., Narazaki M; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan., Kumanogoh A; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Integrated Frontier Research for Medical Science Division, Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Japan Agency for Medical Research and Development - Core Research for Evolutional Science and Technology (AMED-CREST), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Center for Infectious Diseases for Education and Research (CiDER), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Center for Advanced Modalities and DDS (CAMaD), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp., Nishide M; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan. nishide@imed3.med.osaka-u.ac.jp.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan. nishide@imed3.med.osaka-u.ac.jp.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan. nishide@imed3.med.osaka-u.ac.jp.
Source: Nature communications [Nat Commun] 2025 Jun 17; Vol. 16 (1), pp. 4949. Date of Electronic Publication: 2025 Jun 17.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: Single-cell analysis reveals immune cell abnormalities underlying the clinical heterogeneity of patients with systemic sclerosis.
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  Data: <searchLink fieldCode="AU" term="%22Shimagami+H%22">Shimagami H</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Nishimura+K%22">Nishimura K</searchLink>; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. 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Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Edahiro+R%22">Edahiro R</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Statistical Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Laboratory for Systems Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.<br /><searchLink fieldCode="AU" term="%22Itotagawa+E%22">Itotagawa E</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Naito+M%22">Naito M</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Kawada+S%22">Kawada S</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Nakatsubo+D%22">Nakatsubo D</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Matsukawa+K%22">Matsukawa K</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Namba-Hamano+T%22">Namba-Hamano T</searchLink>; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Inoue+K%22">Inoue K</searchLink>; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Takahashi+A%22">Takahashi A</searchLink>; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Mizui+M%22">Mizui M</searchLink>; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Kato+S%22">Kato S</searchLink>; 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Osaka International Medical & Science Center, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Higa+S%22">Higa S</searchLink>; Osaka International Medical & Science Center, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Omiya+R%22">Omiya R</searchLink>; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan.<br /><searchLink fieldCode="AU" term="%22Isaka+Y%22">Isaka Y</searchLink>; Department of Nephrology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Takehara+T%22">Takehara T</searchLink>; Department of Gastroenterology and Hepatology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Nonomura+N%22">Nonomura N</searchLink>; Department of Urology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Okada+Y%22">Okada Y</searchLink>; Department of Statistical Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Laboratory for Systems Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.; Integrated Frontier Research for Medical Science Division, Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka, Japan.; Statistical Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Genome Informatics, Graduate School of Medicine, the University of Tokyo, Bunkyo-ku, Tokyo, Japan.; Japan Agency for Medical Research and Development - Core Research for Evolutional Science and Technology (AMED-CREST), Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Hattori+K%22">Hattori K</searchLink>; Joint Research Chair of Innovative Drug Discovery in Immunology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Research Division, Chugai Pharmaceutical Co. Ltd, Yokohama, Kanagawa, Japan.<br /><searchLink fieldCode="AU" term="%22Narazaki+M%22">Narazaki M</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Kumanogoh+A%22">Kumanogoh A</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Integrated Frontier Research for Medical Science Division, Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Japan Agency for Medical Research and Development - Core Research for Evolutional Science and Technology (AMED-CREST), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Center for Infectious Diseases for Education and Research (CiDER), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.; Center for Advanced Modalities and DDS (CAMaD), Osaka University, Suita, Osaka, Japan. kumanogo@imed3.med.osaka-u.ac.jp.<br /><searchLink fieldCode="AU" term="%22Nishide+M%22">Nishide M</searchLink>; Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan. nishide@imed3.med.osaka-u.ac.jp.; Department of Immunopathology, World Premier International Research Center Initiative (WPI), Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan. nishide@imed3.med.osaka-u.ac.jp.; Department of Advanced Clinical and Translational Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, Japan. nishide@imed3.med.osaka-u.ac.jp.
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          Name:
            NameFull: Isaka Y
      – PersonEntity:
          Name:
            NameFull: Takehara T
      – PersonEntity:
          Name:
            NameFull: Nonomura N
      – PersonEntity:
          Name:
            NameFull: Okada Y
      – PersonEntity:
          Name:
            NameFull: Hattori K
      – PersonEntity:
          Name:
            NameFull: Narazaki M
      – PersonEntity:
          Name:
            NameFull: Kumanogoh A
      – PersonEntity:
          Name:
            NameFull: Nishide M
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 17
              M: 06
              Text: 2025 Jun 17
              Type: published
              Y: 2025
          Identifiers:
            – Type: issn-electronic
              Value: 2041-1723
          Numbering:
            – Type: volume
              Value: 16
            – Type: issue
              Value: 1
          Titles:
            – TitleFull: Nature communications
              Type: main
ResultId 1