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Linkage-based ortholog refinement in bacterial pangenomes with CLARC.

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Title: Linkage-based ortholog refinement in bacterial pangenomes with CLARC.
Authors: González Ojeda I; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.; Harvard Biophysics Graduate Program, Graduate School of Arts and Sciences, Harvard University, Boston, MA 02115, United States., Palace SG; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.; Department of Immunology and Infectious Diseases, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States., Martinez PP; Department of Microbiology, University of Illinois Urbana-Champaign, Champaign, IL 61801, United States., Azarian T; Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32816, United States., Grant LR; Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21218, United States., Hammitt LL; Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21218, United States., Hanage WP; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States., Lipsitch M; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.; Department of Immunology and Infectious Diseases, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.
Source: Nucleic acids research [Nucleic Acids Res] 2025 Jun 20; Vol. 53 (12).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Linkage-based ortholog refinement in bacterial pangenomes with CLARC.
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  Data: <searchLink fieldCode="AU" term="%22González+Ojeda+I%22">González Ojeda I</searchLink>; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.; Harvard Biophysics Graduate Program, Graduate School of Arts and Sciences, Harvard University, Boston, MA 02115, United States.<br /><searchLink fieldCode="AU" term="%22Palace+SG%22">Palace SG</searchLink>; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.; Department of Immunology and Infectious Diseases, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.<br /><searchLink fieldCode="AU" term="%22Martinez+PP%22">Martinez PP</searchLink>; Department of Microbiology, University of Illinois Urbana-Champaign, Champaign, IL 61801, United States.<br /><searchLink fieldCode="AU" term="%22Azarian+T%22">Azarian T</searchLink>; Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32816, United States.<br /><searchLink fieldCode="AU" term="%22Grant+LR%22">Grant LR</searchLink>; Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21218, United States.<br /><searchLink fieldCode="AU" term="%22Hammitt+LL%22">Hammitt LL</searchLink>; Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21218, United States.<br /><searchLink fieldCode="AU" term="%22Hanage+WP%22">Hanage WP</searchLink>; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.<br /><searchLink fieldCode="AU" term="%22Lipsitch+M%22">Lipsitch M</searchLink>; Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.; Department of Immunology and Infectious Diseases, T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, United States.
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        Value: 10.1093/nar/gkaf488
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              Text: 2025 Jun 20
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