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Cell Marker Accordion: interpretable single-cell and spatial omics annotation in health and disease.

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Title: Cell Marker Accordion: interpretable single-cell and spatial omics annotation in health and disease.
Authors: Busarello E; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy. emma.busarello@unitn.it., Biancon G; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA.; Hematology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy., Cimignolo I; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Lauria F; Institute of Biophysics, CNR Unit at Trento, Trento, Italy., Ibnat Z; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Ramirez C; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Tomè G; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.; Institute of Biophysics, CNR Unit at Trento, Trento, Italy., Ciuffreda M; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Bucciarelli G; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Pilli A; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Marino SM; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Bontempi V; Laboratory of Experimental Cancer Biology, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Ress F; Armenise-Harvard Laboratory of Brain Disorders and Cancer, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Aass KR; Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway., VanOudenhove J; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA., Tiberi L; Armenise-Harvard Laboratory of Brain Disorders and Cancer, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Mione MC; Laboratory of Experimental Cancer Biology, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Standal T; Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway., Macchi P; Laboratory of Molecular and Cellular Neurobiology, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy., Viero G; Institute of Biophysics, CNR Unit at Trento, Trento, Italy., Halene S; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA. stephanie.halene@yale.edu.; Department of Pathology, Yale University School of Medicine, New Haven, CT, USA. stephanie.halene@yale.edu., Tebaldi T; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy. toma.tebaldi@unitn.it.; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA. toma.tebaldi@unitn.it.
Source: Nature communications [Nat Commun] 2025 Jul 07; Vol. 16 (1), pp. 5399. Date of Electronic Publication: 2025 Jul 07.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: Cell Marker Accordion: interpretable single-cell and spatial omics annotation in health and disease.
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  Data: <searchLink fieldCode="AU" term="%22Busarello+E%22">Busarello E</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy. emma.busarello@unitn.it.<br /><searchLink fieldCode="AU" term="%22Biancon+G%22">Biancon G</searchLink>; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA.; Hematology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.<br /><searchLink fieldCode="AU" term="%22Cimignolo+I%22">Cimignolo I</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Lauria+F%22">Lauria F</searchLink>; Institute of Biophysics, CNR Unit at Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Ibnat+Z%22">Ibnat Z</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Ramirez+C%22">Ramirez C</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Tomè+G%22">Tomè G</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.; Institute of Biophysics, CNR Unit at Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Ciuffreda+M%22">Ciuffreda M</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Bucciarelli+G%22">Bucciarelli G</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Pilli+A%22">Pilli A</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Marino+SM%22">Marino SM</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Bontempi+V%22">Bontempi V</searchLink>; Laboratory of Experimental Cancer Biology, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Ress+F%22">Ress F</searchLink>; Armenise-Harvard Laboratory of Brain Disorders and Cancer, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Aass+KR%22">Aass KR</searchLink>; Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.<br /><searchLink fieldCode="AU" term="%22VanOudenhove+J%22">VanOudenhove J</searchLink>; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Tiberi+L%22">Tiberi L</searchLink>; Armenise-Harvard Laboratory of Brain Disorders and Cancer, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Mione+MC%22">Mione MC</searchLink>; Laboratory of Experimental Cancer Biology, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Standal+T%22">Standal T</searchLink>; Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.<br /><searchLink fieldCode="AU" term="%22Macchi+P%22">Macchi P</searchLink>; Laboratory of Molecular and Cellular Neurobiology, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Viero+G%22">Viero G</searchLink>; Institute of Biophysics, CNR Unit at Trento, Trento, Italy.<br /><searchLink fieldCode="AU" term="%22Halene+S%22">Halene S</searchLink>; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA. stephanie.halene@yale.edu.; Department of Pathology, Yale University School of Medicine, New Haven, CT, USA. stephanie.halene@yale.edu.<br /><searchLink fieldCode="AU" term="%22Tebaldi+T%22">Tebaldi T</searchLink>; Laboratory of RNA and Disease Data Science, Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy. toma.tebaldi@unitn.it.; Section of Hematology, Department of Internal Medicine, Yale Comprehensive Cancer Center, Yale University School of Medicine, New Haven, CT, USA. toma.tebaldi@unitn.it.
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  Data: <searchLink fieldCode="JN" term="%22101528555%22">Nature communications</searchLink> [Nat Commun] 2025 Jul 07; Vol. 16 (1), pp. 5399. <i>Date of Electronic Publication: </i>2025 Jul 07.
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