The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus.

Saved in:
Bibliographic Details
Title: The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus.
Authors: Huang YN; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA., Jaiswal PV; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, California, 90089, USA., Rajesh A; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, 90089, USA., Yadav A; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, USA., Yu D; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA., Liu F; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA., Scheg G; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA., Shih E; Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA., Boldirev G; Department of Computer Science, College of Arts and Sciences, Georgia State University, Atlanta, GA, 30303, USA., Nakashidze I; Department of Natural Sciences and Health Care, Batumi Shota Rustaveli State University, 6010, Batumi, Georgia., Sarkar A; School of Computing and Electrical Engineering, Indian Institute of Technology Mandi, North Campus, Kamand, Mandi, HP 175005, India., Mehta JH; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, USA., Wang K; Department of Translational Genomics, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA., Patel KK; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, California, 90089, USA., Mirza MAB; Department of Computer Science & Engineering, University of Bridgeport, Bridgeport, CT 06604, USA., Hapani KC; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA., Peng Q; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, 90089, USA., Ayyala R; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA., Guo R; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, 90089, USA., Kapur S; Seven Lakes High School, 9251 South Fry Road, Katy, Texas, 77494, United States of America., Ramesh T; Center for Personalized Cancer Therapy, University of Massachusetts Boston, Boston, MA, 02125, USA., Ciorbă D; Department of Computers, Informatics and Microelectronics, Technical University of Moldova, Chisinau, 2045, Moldova., Munteanu V; Department of Computers, Informatics and Microelectronics, Technical University of Moldova, Chisinau, 2045, Moldova.; Department of Biological and Morphofunctional Sciences, College of Medicine and Biological Sciences, University of Suceava, Suceava, 720229, Romania., Bostan V; Department of Computers, Informatics and Microelectronics, Technical University of Moldova, Chisinau, 2045, Moldova., Dimian M; Department of Computers, Electronics and Automation, Stefan cel Mare University of Suceava, 720229 Suceava, Romania., Abedalthagafi MS; Department of Pathology & Laboratory Medicine, Emory University Hospital, Atlanta, GA, USA King Salman Center for Disability Research, Riyadh, Saudi Arabia., Mangul S; Department of Biological and Morphofunctional Sciences, College of Medicine and Biological Sciences, Stefan cel Mare University of Suceava, 720229 Suceava, Romania.; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA.; Department of Computers, Informatics, and Microelectronics, Technical University of Moldova, 2045 Chisinau, Moldova.; Sage Bionetworks, Seattle, WA, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Jul 07. Date of Electronic Publication: 2025 Jul 07.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
FullText Text:
  Availability: 0
Header DbId: mdl
DbLabel: MEDLINE Ultimate
An: 40672350
AccessLevel: 2
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Huang+YN%22">Huang YN</searchLink>; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Jaiswal+PV%22">Jaiswal PV</searchLink>; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, California, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Rajesh+A%22">Rajesh A</searchLink>; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Yadav+A%22">Yadav A</searchLink>; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Yu+D%22">Yu D</searchLink>; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Liu+F%22">Liu F</searchLink>; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Scheg+G%22">Scheg G</searchLink>; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Shih+E%22">Shih E</searchLink>; Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Boldirev+G%22">Boldirev G</searchLink>; Department of Computer Science, College of Arts and Sciences, Georgia State University, Atlanta, GA, 30303, USA.<br /><searchLink fieldCode="AU" term="%22Nakashidze+I%22">Nakashidze I</searchLink>; Department of Natural Sciences and Health Care, Batumi Shota Rustaveli State University, 6010, Batumi, Georgia.<br /><searchLink fieldCode="AU" term="%22Sarkar+A%22">Sarkar A</searchLink>; School of Computing and Electrical Engineering, Indian Institute of Technology Mandi, North Campus, Kamand, Mandi, HP 175005, India.<br /><searchLink fieldCode="AU" term="%22Mehta+JH%22">Mehta JH</searchLink>; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Wang+K%22">Wang K</searchLink>; Department of Translational Genomics, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Patel+KK%22">Patel KK</searchLink>; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, California, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Mirza+MAB%22">Mirza MAB</searchLink>; Department of Computer Science & Engineering, University of Bridgeport, Bridgeport, CT 06604, USA.<br /><searchLink fieldCode="AU" term="%22Hapani+KC%22">Hapani KC</searchLink>; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Peng+Q%22">Peng Q</searchLink>; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Ayyala+R%22">Ayyala R</searchLink>; Department of Quantitative and Computational Biology, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Guo+R%22">Guo R</searchLink>; Department of Pharmacology and Pharmaceutical Sciences, Alfred E. Mann School of Pharmacy, University of Southern California, Los Angeles, CA, 90089, USA.<br /><searchLink fieldCode="AU" term="%22Kapur+S%22">Kapur S</searchLink>; Seven Lakes High School, 9251 South Fry Road, Katy, Texas, 77494, United States of America.<br /><searchLink fieldCode="AU" term="%22Ramesh+T%22">Ramesh T</searchLink>; Center for Personalized Cancer Therapy, University of Massachusetts Boston, Boston, MA, 02125, USA.<br /><searchLink fieldCode="AU" term="%22Ciorbă+D%22">Ciorbă D</searchLink>; Department of Computers, Informatics and Microelectronics, Technical University of Moldova, Chisinau, 2045, Moldova.<br /><searchLink fieldCode="AU" term="%22Munteanu+V%22">Munteanu V</searchLink>; Department of Computers, Informatics and Microelectronics, Technical University of Moldova, Chisinau, 2045, Moldova.; Department of Biological and Morphofunctional Sciences, College of Medicine and Biological Sciences, University of Suceava, Suceava, 720229, Romania.<br /><searchLink fieldCode="AU" term="%22Bostan+V%22">Bostan V</searchLink>; Department of Computers, Informatics and Microelectronics, Technical University of Moldova, Chisinau, 2045, Moldova.<br /><searchLink fieldCode="AU" term="%22Dimian+M%22">Dimian M</searchLink>; Department of Computers, Electronics and Automation, Stefan cel Mare University of Suceava, 720229 Suceava, Romania.<br /><searchLink fieldCode="AU" term="%22Abedalthagafi+MS%22">Abedalthagafi MS</searchLink>; Department of Pathology & Laboratory Medicine, Emory University Hospital, Atlanta, GA, USA King Salman Center for Disability Research, Riyadh, Saudi Arabia.<br /><searchLink fieldCode="AU" term="%22Mangul+S%22">Mangul S</searchLink>; Department of Biological and Morphofunctional Sciences, College of Medicine and Biological Sciences, Stefan cel Mare University of Suceava, 720229 Suceava, Romania.; Department of Clinical Pharmacy, Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, California, 90089, USA.; Department of Computers, Informatics, and Microelectronics, Technical University of Moldova, 2045 Chisinau, Moldova.; Sage Bionetworks, Seattle, WA, USA.
– Name: TitleSource
  Label: Source
  Group: Src
  Data: <searchLink fieldCode="JN" term="%22101680187%22">BioRxiv : the preprint server for biology</searchLink> [bioRxiv] 2025 Jul 07. <i>Date of Electronic Publication: </i>2025 Jul 07.
– Name: TypePub
  Label: Publication Type
  Group: TypPub
  Data: Journal Article; Preprint
– Name: TitleSource
  Label: Journal Info
  Group: Src
  Data: <i>Country of Publication: </i>United States <i>NLM ID: </i>101680187 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2692-8205 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226928205%22">26928205 </searchLink><i>NLM ISO Abbreviation: </i>bioRxiv <i>Subsets: </i>PubMed not MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=40672350
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1101/2021.11.22.469640
    Languages:
      – Code: eng
        Text: English
    Titles:
      – TitleFull: The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Huang YN
      – PersonEntity:
          Name:
            NameFull: Jaiswal PV
      – PersonEntity:
          Name:
            NameFull: Rajesh A
      – PersonEntity:
          Name:
            NameFull: Yadav A
      – PersonEntity:
          Name:
            NameFull: Yu D
      – PersonEntity:
          Name:
            NameFull: Liu F
      – PersonEntity:
          Name:
            NameFull: Scheg G
      – PersonEntity:
          Name:
            NameFull: Shih E
      – PersonEntity:
          Name:
            NameFull: Boldirev G
      – PersonEntity:
          Name:
            NameFull: Nakashidze I
      – PersonEntity:
          Name:
            NameFull: Sarkar A
      – PersonEntity:
          Name:
            NameFull: Mehta JH
      – PersonEntity:
          Name:
            NameFull: Wang K
      – PersonEntity:
          Name:
            NameFull: Patel KK
      – PersonEntity:
          Name:
            NameFull: Mirza MAB
      – PersonEntity:
          Name:
            NameFull: Hapani KC
      – PersonEntity:
          Name:
            NameFull: Peng Q
      – PersonEntity:
          Name:
            NameFull: Ayyala R
      – PersonEntity:
          Name:
            NameFull: Guo R
      – PersonEntity:
          Name:
            NameFull: Kapur S
      – PersonEntity:
          Name:
            NameFull: Ramesh T
      – PersonEntity:
          Name:
            NameFull: Ciorbă D
      – PersonEntity:
          Name:
            NameFull: Munteanu V
      – PersonEntity:
          Name:
            NameFull: Bostan V
      – PersonEntity:
          Name:
            NameFull: Dimian M
      – PersonEntity:
          Name:
            NameFull: Abedalthagafi MS
      – PersonEntity:
          Name:
            NameFull: Mangul S
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 07
              M: 07
              Text: 2025 Jul 07
              Type: published
              Y: 2025
          Identifiers:
            – Type: issn-electronic
              Value: 2692-8205
          Titles:
            – TitleFull: BioRxiv : the preprint server for biology
              Type: main
ResultId 1