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A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages.

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Title: A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages.
Authors: Kale V; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK., Baldi G; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK. germana.baldi@ebi.ac.uk., Beracochea M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK., Clausen C; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Escobar-Zepeda A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK., Leanti La Rosa S; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway., Lecaudey LA; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway., Li S; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Mak SST; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Martin MD; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway., Martin Bideguren G; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Pless LA; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Rasmussen JA; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Rogers AB; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK., Sveier H; Lerøy Seafood Group ASA, Bergen, 5020, Norway., León AV; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway.; Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway., Verissimo A; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Gilbert MTP; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway., Richardson L; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK. lornar@ebi.ac.uk., Limborg MT; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark. morten.limborg@sund.ku.dk., Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK. rdf@ebi.ac.uk.
Source: Animal microbiome [Anim Microbiome] 2025 Aug 11; Vol. 7 (1), pp. 85. Date of Electronic Publication: 2025 Aug 11.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101759457 Publication Model: Electronic Cited Medium: Internet ISSN: 2524-4671 (Electronic) Linking ISSN: 25244671 NLM ISO Abbreviation: Anim Microbiome Subsets: PubMed not MEDLINE
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  Data: A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages.
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  Data: <searchLink fieldCode="AU" term="%22Kale+V%22">Kale V</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Baldi+G%22">Baldi G</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK. germana.baldi@ebi.ac.uk.<br /><searchLink fieldCode="AU" term="%22Beracochea+M%22">Beracochea M</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Clausen+C%22">Clausen C</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Escobar-Zepeda+A%22">Escobar-Zepeda A</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Leanti+La+Rosa+S%22">Leanti La Rosa S</searchLink>; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway.<br /><searchLink fieldCode="AU" term="%22Lecaudey+LA%22">Lecaudey LA</searchLink>; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.<br /><searchLink fieldCode="AU" term="%22Li+S%22">Li S</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Mak+SST%22">Mak SST</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Martin+MD%22">Martin MD</searchLink>; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.<br /><searchLink fieldCode="AU" term="%22Martin+Bideguren+G%22">Martin Bideguren G</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Pless+LA%22">Pless LA</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Rasmussen+JA%22">Rasmussen JA</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Rogers+AB%22">Rogers AB</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Sveier+H%22">Sveier H</searchLink>; Lerøy Seafood Group ASA, Bergen, 5020, Norway.<br /><searchLink fieldCode="AU" term="%22León+AV%22">León AV</searchLink>; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway.; Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway.<br /><searchLink fieldCode="AU" term="%22Verissimo+A%22">Verissimo A</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.<br /><searchLink fieldCode="AU" term="%22Gilbert+MTP%22">Gilbert MTP</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Department of Natural History, NTNU University Museum, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.<br /><searchLink fieldCode="AU" term="%22Richardson+L%22">Richardson L</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK. lornar@ebi.ac.uk.<br /><searchLink fieldCode="AU" term="%22Limborg+MT%22">Limborg MT</searchLink>; Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark. morten.limborg@sund.ku.dk.<br /><searchLink fieldCode="AU" term="%22Finn+RD%22">Finn RD</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK. rdf@ebi.ac.uk.
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  Data: <searchLink fieldCode="JN" term="%22101759457%22">Animal microbiome</searchLink> [Anim Microbiome] 2025 Aug 11; Vol. 7 (1), pp. 85. <i>Date of Electronic Publication: </i>2025 Aug 11.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central%22">BioMed Central </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101759457 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2524-4671 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2225244671%22">25244671 </searchLink><i>NLM ISO Abbreviation: </i>Anim Microbiome <i>Subsets: </i>PubMed not MEDLINE
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              Text: 2025 Aug 11
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