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Transformer patient embedding using electronic health records enables patient stratification and progression analysis.

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Title: Transformer patient embedding using electronic health records enables patient stratification and progression analysis.
Authors: Xian S; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA. suxian06@gmail.com., Grabowska ME; Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA., Kullo IJ; Department of Cardiovascular Medicine and the Gonda Vascular Center, Mayo Clinic Rochester Minnesota, Rochester, MN, USA., Luo Y; Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA., Smoller JW; Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.; Center for Precision Psychiatry, Department of Psychiatry, Massachusetts General Hospital, Boston, MA, USA., Walunas TL; Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA., Wei WQ; Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA., Jarvik GP; Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Mooney SD; Center for Information Technology, National Institutes of Health, Bethesda, MD, USA., Crosslin DR; Department of Medicine, Division of Biomedical Informatics and Genomics, Tulane University, New Orleans, LA, USA.
Source: NPJ digital medicine [NPJ Digit Med] 2025 Aug 14; Vol. 8 (1), pp. 521. Date of Electronic Publication: 2025 Aug 14.
Publication Type: Journal Article
Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101731738 Publication Model: Electronic Cited Medium: Internet ISSN: 2398-6352 (Electronic) Linking ISSN: 23986352 NLM ISO Abbreviation: NPJ Digit Med Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Xian+S%22">Xian S</searchLink>; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA. suxian06@gmail.com.<br /><searchLink fieldCode="AU" term="%22Grabowska+ME%22">Grabowska ME</searchLink>; Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA.<br /><searchLink fieldCode="AU" term="%22Kullo+IJ%22">Kullo IJ</searchLink>; Department of Cardiovascular Medicine and the Gonda Vascular Center, Mayo Clinic Rochester Minnesota, Rochester, MN, USA.<br /><searchLink fieldCode="AU" term="%22Luo+Y%22">Luo Y</searchLink>; Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Smoller+JW%22">Smoller JW</searchLink>; Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.; Center for Precision Psychiatry, Department of Psychiatry, Massachusetts General Hospital, Boston, MA, USA.<br /><searchLink fieldCode="AU" term="%22Walunas+TL%22">Walunas TL</searchLink>; Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Wei+WQ%22">Wei WQ</searchLink>; Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA.<br /><searchLink fieldCode="AU" term="%22Jarvik+GP%22">Jarvik GP</searchLink>; Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Mooney+SD%22">Mooney SD</searchLink>; Center for Information Technology, National Institutes of Health, Bethesda, MD, USA.<br /><searchLink fieldCode="AU" term="%22Crosslin+DR%22">Crosslin DR</searchLink>; Department of Medicine, Division of Biomedical Informatics and Genomics, Tulane University, New Orleans, LA, USA.
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              Text: 2025 Aug 14
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