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The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression.

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Title: The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression.
Authors: Wang X; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Nursyifa C; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Aninta SG; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Garcia-Erill G; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; Bioinformatics Research Centre, Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark., Bertola LD; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; National Centre for Biological Sciences (NCBS), Bangalore, India., Khan A; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; Centre for Ecological Sciences, Indian Institute of Science, Bangalore, Karnataka, India., Kuja J; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Hanghøj K; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Meisner J; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; Biological and Precision Psychiatry, Mental Health Centre Copenhagen, Copenhagen University Hospital, København, Denmark.; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, København, Denmark., Bøggild T; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Bradshaw CJA; Global Ecology | Partuyarta Ngadluku Wardli Kuu, College of Science and Engineering, Flinders University, Adelaide, SA, Australia.; Australian Research Council Centre of Excellence for Australian Biodiversity and Heritage, Wollongong, NSW, Australia., Al-Chaer A; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Persada AP; Genetic Conservation and Genome Laboratory, IPB University, Bogor, Indonesia., Priyono DS; Faculty of Biology, Universitas Gadjah Mada, Yogyakarta, Indonesia., Tribudi YA; Department of Animal Science, Faculty of Agriculture, Universitas Tanjungpura, Pontianak, Indonesia., Sudrajad P; Research Center for Animal Husbandry, National Research and Innovation Agency, Jakarta, Indonesia., Gaina CD; Faculty of Medicine and Veterinary Medicine, Universitas Nusa Cendana, Kupang, Indonesia., Jiang Y; Department of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, Northwest Agriculture and Forestry University, Yangling, China., Lenstra JA; Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands., Cauble-Sims R; Ten Triple X Ranch, Glen Rose, TX, USA., Rosen BD; U.S. Department of Agriculture, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD, USA., Hagen DE; Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA., Heaton MP; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA., Smith TPL; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA., Frantz L; Paleogenomics Group, Department of Veterinary Sciences, Ludwig Maximilian University, Munich, Germany.; School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK., Larson G; Palaeogenomics and Bio-Archaeology Research Network, School of Archaeology, University of Oxford, Oxford, UK., Sinding MS; Department of Biology, University of Copenhagen, Copenhagen N, Denmark., Solihin DD; Genetic Conservation and Genome Laboratory, IPB University, Bogor, Indonesia.; Department of Biology, Faculty of Science, IPB University, Bogor, Indonesia., Agil M; Division of Reproduction and Obstetrics, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, Indonesia., Purwantara B; Division of Reproduction and Obstetrics, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, Indonesia., Heller R; Department of Biology, University of Copenhagen, Copenhagen N, Denmark. rheller@bio.ku.dk.
Source: Nature communications [Nat Commun] 2025 Sep 25; Vol. 16 (1), pp. 8192. Date of Electronic Publication: 2025 Sep 25.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Wang+X%22">Wang X</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Nursyifa+C%22">Nursyifa C</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Aninta+SG%22">Aninta SG</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Garcia-Erill+G%22">Garcia-Erill G</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; Bioinformatics Research Centre, Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.<br /><searchLink fieldCode="AU" term="%22Bertola+LD%22">Bertola LD</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; National Centre for Biological Sciences (NCBS), Bangalore, India.<br /><searchLink fieldCode="AU" term="%22Khan+A%22">Khan A</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; Centre for Ecological Sciences, Indian Institute of Science, Bangalore, Karnataka, India.<br /><searchLink fieldCode="AU" term="%22Kuja+J%22">Kuja J</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Hanghøj+K%22">Hanghøj K</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Meisner+J%22">Meisner J</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.; Biological and Precision Psychiatry, Mental Health Centre Copenhagen, Copenhagen University Hospital, København, Denmark.; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, København, Denmark.<br /><searchLink fieldCode="AU" term="%22Bøggild+T%22">Bøggild T</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Bradshaw+CJA%22">Bradshaw CJA</searchLink>; 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Faculty of Medicine and Veterinary Medicine, Universitas Nusa Cendana, Kupang, Indonesia.<br /><searchLink fieldCode="AU" term="%22Jiang+Y%22">Jiang Y</searchLink>; Department of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, Northwest Agriculture and Forestry University, Yangling, China.<br /><searchLink fieldCode="AU" term="%22Lenstra+JA%22">Lenstra JA</searchLink>; Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.<br /><searchLink fieldCode="AU" term="%22Cauble-Sims+R%22">Cauble-Sims R</searchLink>; Ten Triple X Ranch, Glen Rose, TX, USA.<br /><searchLink fieldCode="AU" term="%22Rosen+BD%22">Rosen BD</searchLink>; U.S. Department of Agriculture, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD, USA.<br /><searchLink fieldCode="AU" term="%22Hagen+DE%22">Hagen DE</searchLink>; Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA.<br /><searchLink fieldCode="AU" term="%22Heaton+MP%22">Heaton MP</searchLink>; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA.<br /><searchLink fieldCode="AU" term="%22Smith+TPL%22">Smith TPL</searchLink>; U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Clay Center, NE, USA.<br /><searchLink fieldCode="AU" term="%22Frantz+L%22">Frantz L</searchLink>; Paleogenomics Group, Department of Veterinary Sciences, Ludwig Maximilian University, Munich, Germany.; School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK.<br /><searchLink fieldCode="AU" term="%22Larson+G%22">Larson G</searchLink>; Palaeogenomics and Bio-Archaeology Research Network, School of Archaeology, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Sinding+MS%22">Sinding MS</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark.<br /><searchLink fieldCode="AU" term="%22Solihin+DD%22">Solihin DD</searchLink>; Genetic Conservation and Genome Laboratory, IPB University, Bogor, Indonesia.; Department of Biology, Faculty of Science, IPB University, Bogor, Indonesia.<br /><searchLink fieldCode="AU" term="%22Agil+M%22">Agil M</searchLink>; Division of Reproduction and Obstetrics, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, Indonesia.<br /><searchLink fieldCode="AU" term="%22Purwantara+B%22">Purwantara B</searchLink>; Division of Reproduction and Obstetrics, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, Indonesia.<br /><searchLink fieldCode="AU" term="%22Heller+R%22">Heller R</searchLink>; Department of Biology, University of Copenhagen, Copenhagen N, Denmark. rheller@bio.ku.dk.
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  Data: <searchLink fieldCode="JN" term="%22101528555%22">Nature communications</searchLink> [Nat Commun] 2025 Sep 25; Vol. 16 (1), pp. 8192. <i>Date of Electronic Publication: </i>2025 Sep 25.
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