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Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples.

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Title: Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples.
Authors: Li S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. siranli@cshl.edu., Alexander J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Kendall J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Andrews P; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Rose E; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Orjuela H; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Park S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Podszus C; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Shanley L; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Ranade N; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Morris P; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Stauder D; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Bradford D; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Laster Z; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Ronemus M; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Rishi A; Department of Pathology and Laboratory Medicine, Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, USA., Frimer M; Department of Obstetrics and Gynecology, Division of Gynecologic Oncology, Zucker School of Medicine at Hofstra/Northwell, New Hyde Park, Northwell Health, NY, USA., Ma R; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Eric and Wendy Schmidt Center, Broad Institute of MIT and Harvard, Boston, MA, USA.; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA., Donoho DL; Department of Statistics, Stanford University, Stanford, CA, USA., Goldberg GL; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Department of Obstetrics and Gynecology, Division of Gynecologic Oncology, Zucker School of Medicine at Hofstra/Northwell, New Hyde Park, Northwell Health, NY, USA., Wigler M; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Levy D; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. levy@cshl.edu.
Source: Genome biology [Genome Biol] 2025 Sep 27; Vol. 26 (1), pp. 314. Date of Electronic Publication: 2025 Sep 27.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples.
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  Data: <searchLink fieldCode="AU" term="%22Li+S%22">Li S</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. siranli@cshl.edu.<br /><searchLink fieldCode="AU" term="%22Alexander+J%22">Alexander J</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Kendall+J%22">Kendall J</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Andrews+P%22">Andrews P</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Rose+E%22">Rose E</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Orjuela+H%22">Orjuela H</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Park+S%22">Park S</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Podszus+C%22">Podszus C</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Shanley+L%22">Shanley L</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Ranade+N%22">Ranade N</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Morris+P%22">Morris P</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Stauder+D%22">Stauder D</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Bradford+D%22">Bradford D</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Laster+Z%22">Laster Z</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Ronemus+M%22">Ronemus M</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Rishi+A%22">Rishi A</searchLink>; Department of Pathology and Laboratory Medicine, Zucker School of Medicine at Hofstra/Northwell, Hempstead, NY, USA.<br /><searchLink fieldCode="AU" term="%22Frimer+M%22">Frimer M</searchLink>; Department of Obstetrics and Gynecology, Division of Gynecologic Oncology, Zucker School of Medicine at Hofstra/Northwell, New Hyde Park, Northwell Health, NY, USA.<br /><searchLink fieldCode="AU" term="%22Ma+R%22">Ma R</searchLink>; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Eric and Wendy Schmidt Center, Broad Institute of MIT and Harvard, Boston, MA, USA.; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA.<br /><searchLink fieldCode="AU" term="%22Donoho+DL%22">Donoho DL</searchLink>; Department of Statistics, Stanford University, Stanford, CA, USA.<br /><searchLink fieldCode="AU" term="%22Goldberg+GL%22">Goldberg GL</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.; Department of Obstetrics and Gynecology, Division of Gynecologic Oncology, Zucker School of Medicine at Hofstra/Northwell, New Hyde Park, Northwell Health, NY, USA.<br /><searchLink fieldCode="AU" term="%22Wigler+M%22">Wigler M</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.<br /><searchLink fieldCode="AU" term="%22Levy+D%22">Levy D</searchLink>; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. levy@cshl.edu.
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  Data: <searchLink fieldCode="JN" term="%22100960660%22">Genome biology</searchLink> [Genome Biol] 2025 Sep 27; Vol. 26 (1), pp. 314. <i>Date of Electronic Publication: </i>2025 Sep 27.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central+Ltd%22">BioMed Central Ltd </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100960660 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1474-760X (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214747596%22">14747596 </searchLink><i>NLM ISO Abbreviation: </i>Genome Biol <i>Subsets: </i>MEDLINE
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