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C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels.

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Title: C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels.
Authors: Haas DT; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany., Weindl D; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Kakimoto P; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany., Trautmann EM; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany., Schessner JP; Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany., Mao X; Regeneron Pharmaceuticals, Inc., Tarrytown, NY, USA., Gerl MJ; Lipotype GmbH, Dresden, Germany., Gerwien M; Max Delbrück Center for Molecular Medicine, Berlin, Germany., Müller TD; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany.; Walther Straub Institute of Pharmacology and Toxicology, Ludwig Maximilian University of Munich, Munich, Germany., Klose C; Lipotype GmbH, Dresden, Germany., Cheng X; Regeneron Pharmaceuticals, Inc., Tarrytown, NY, USA., Hasenauer J; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Krahmer N; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany. natalie.krahmer@helmholtz-munich.de.; German Center for Diabetes Research (DZD), Neuherberg, Germany. natalie.krahmer@helmholtz-munich.de.
Source: Nature methods [Nat Methods] 2026 Jan; Vol. 23 (1), pp. 118-130. Date of Electronic Publication: 2025 Dec 04.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Haas+DT%22">Haas DT</searchLink>; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany.<br /><searchLink fieldCode="AU" term="%22Weindl+D%22">Weindl D</searchLink>; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.<br /><searchLink fieldCode="AU" term="%22Kakimoto+P%22">Kakimoto P</searchLink>; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany.<br /><searchLink fieldCode="AU" term="%22Trautmann+EM%22">Trautmann EM</searchLink>; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany.<br /><searchLink fieldCode="AU" term="%22Schessner+JP%22">Schessner JP</searchLink>; Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.<br /><searchLink fieldCode="AU" term="%22Mao+X%22">Mao X</searchLink>; Regeneron Pharmaceuticals, Inc., Tarrytown, NY, USA.<br /><searchLink fieldCode="AU" term="%22Gerl+MJ%22">Gerl MJ</searchLink>; Lipotype GmbH, Dresden, Germany.<br /><searchLink fieldCode="AU" term="%22Gerwien+M%22">Gerwien M</searchLink>; Max Delbrück Center for Molecular Medicine, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Müller+TD%22">Müller TD</searchLink>; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany.; Walther Straub Institute of Pharmacology and Toxicology, Ludwig Maximilian University of Munich, Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Klose+C%22">Klose C</searchLink>; Lipotype GmbH, Dresden, Germany.<br /><searchLink fieldCode="AU" term="%22Cheng+X%22">Cheng X</searchLink>; Regeneron Pharmaceuticals, Inc., Tarrytown, NY, USA.<br /><searchLink fieldCode="AU" term="%22Hasenauer+J%22">Hasenauer J</searchLink>; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.<br /><searchLink fieldCode="AU" term="%22Krahmer+N%22">Krahmer N</searchLink>; Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Munich, Neuherberg, Germany. natalie.krahmer@helmholtz-munich.de.; German Center for Diabetes Research (DZD), Neuherberg, Germany. natalie.krahmer@helmholtz-munich.de.
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  Data: <searchLink fieldCode="JN" term="%22101215604%22">Nature methods</searchLink> [Nat Methods] 2026 Jan; Vol. 23 (1), pp. 118-130. <i>Date of Electronic Publication: </i>2025 Dec 04.
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