View in EDS

Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study.

Saved in:
Bibliographic Details
Title: Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study.
Authors: Nekrutenko A; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA., Callan D; Dept. of Biology, Temple University, Philadelphia, PA, USA., Van Den Beek M; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA., Baker D; Dept. of Biology, Johns Hopkins University, Baltimore, MD, USA., Rogers D; Clever Canary, LLC, Santa Cruz, CA, USA., Guerler A; Dept. of Biology, Johns Hopkins University, Baltimore, MD, USA., Chilton J; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA., Clawson H; Baskin School of Engineering, University of California, Santa Cruz, USA., Cain S; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA., O'Meara T; Dept. of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA., Beavers K; Texas Advanced Computing Center, The University of Texas, Austin, TX, USA., Schatz M; Dept. of Biology, Johns Hopkins University, Baltimore, MD, USA., Haeussler M; Baskin School of Engineering, University of California, Santa Cruz, USA., Gruning B; Dept. of Bioinformatics, Albert-Ludwigs-University Freiburg, Freiburg, Baden-Württemberg, Germany., Goecks J; Moffitt Cancer Center, Tampa, FL, USA., Pond SK; Dept. of Biology, Temple University, Philadelphia, PA, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Dec 30. Date of Electronic Publication: 2025 Dec 30.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
FullText Text:
  Availability: 0
Header DbId: mdl
DbLabel: MEDLINE Ultimate
An: 41509213
AccessLevel: 2
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Nekrutenko+A%22">Nekrutenko A</searchLink>; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.<br /><searchLink fieldCode="AU" term="%22Callan+D%22">Callan D</searchLink>; Dept. of Biology, Temple University, Philadelphia, PA, USA.<br /><searchLink fieldCode="AU" term="%22Van+Den+Beek+M%22">Van Den Beek M</searchLink>; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.<br /><searchLink fieldCode="AU" term="%22Baker+D%22">Baker D</searchLink>; Dept. of Biology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Rogers+D%22">Rogers D</searchLink>; Clever Canary, LLC, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Guerler+A%22">Guerler A</searchLink>; Dept. of Biology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Chilton+J%22">Chilton J</searchLink>; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.<br /><searchLink fieldCode="AU" term="%22Clawson+H%22">Clawson H</searchLink>; Baskin School of Engineering, University of California, Santa Cruz, USA.<br /><searchLink fieldCode="AU" term="%22Cain+S%22">Cain S</searchLink>; Dept. of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA.<br /><searchLink fieldCode="AU" term="%22O'Meara+T%22">O'Meara T</searchLink>; Dept. of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA.<br /><searchLink fieldCode="AU" term="%22Beavers+K%22">Beavers K</searchLink>; Texas Advanced Computing Center, The University of Texas, Austin, TX, USA.<br /><searchLink fieldCode="AU" term="%22Schatz+M%22">Schatz M</searchLink>; Dept. of Biology, Johns Hopkins University, Baltimore, MD, USA.<br /><searchLink fieldCode="AU" term="%22Haeussler+M%22">Haeussler M</searchLink>; Baskin School of Engineering, University of California, Santa Cruz, USA.<br /><searchLink fieldCode="AU" term="%22Gruning+B%22">Gruning B</searchLink>; Dept. of Bioinformatics, Albert-Ludwigs-University Freiburg, Freiburg, Baden-Württemberg, Germany.<br /><searchLink fieldCode="AU" term="%22Goecks+J%22">Goecks J</searchLink>; Moffitt Cancer Center, Tampa, FL, USA.<br /><searchLink fieldCode="AU" term="%22Pond+SK%22">Pond SK</searchLink>; Dept. of Biology, Temple University, Philadelphia, PA, USA.
– Name: TitleSource
  Label: Source
  Group: Src
  Data: <searchLink fieldCode="JN" term="%22101680187%22">BioRxiv : the preprint server for biology</searchLink> [bioRxiv] 2025 Dec 30. <i>Date of Electronic Publication: </i>2025 Dec 30.
– Name: TypePub
  Label: Publication Type
  Group: TypPub
  Data: Journal Article; Preprint
– Name: TitleSource
  Label: Journal Info
  Group: Src
  Data: <i>Country of Publication: </i>United States <i>NLM ID: </i>101680187 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2692-8205 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2226928205%22">26928205 </searchLink><i>NLM ISO Abbreviation: </i>bioRxiv <i>Subsets: </i>PubMed not MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=41509213
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.64898/2025.12.30.697050
    Languages:
      – Code: eng
        Text: English
    Titles:
      – TitleFull: Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Nekrutenko A
      – PersonEntity:
          Name:
            NameFull: Callan D
      – PersonEntity:
          Name:
            NameFull: Van Den Beek M
      – PersonEntity:
          Name:
            NameFull: Baker D
      – PersonEntity:
          Name:
            NameFull: Rogers D
      – PersonEntity:
          Name:
            NameFull: Guerler A
      – PersonEntity:
          Name:
            NameFull: Chilton J
      – PersonEntity:
          Name:
            NameFull: Clawson H
      – PersonEntity:
          Name:
            NameFull: Cain S
      – PersonEntity:
          Name:
            NameFull: O'Meara T
      – PersonEntity:
          Name:
            NameFull: Beavers K
      – PersonEntity:
          Name:
            NameFull: Schatz M
      – PersonEntity:
          Name:
            NameFull: Haeussler M
      – PersonEntity:
          Name:
            NameFull: Gruning B
      – PersonEntity:
          Name:
            NameFull: Goecks J
      – PersonEntity:
          Name:
            NameFull: Pond SK
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 30
              M: 12
              Text: 2025 Dec 30
              Type: published
              Y: 2025
          Identifiers:
            – Type: issn-electronic
              Value: 2692-8205
          Titles:
            – TitleFull: BioRxiv : the preprint server for biology
              Type: main
ResultId 1