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nf-core/proteinfamilies: a scalable pipeline for the generation of protein families.

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Title: nf-core/proteinfamilies: a scalable pipeline for the generation of protein families.
Authors: Karatzas E; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Beracochea M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Baltoumas FA; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', 34 Fleming Street, Vari, Athens 16672, Greece., Aplakidou E; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', 34 Fleming Street, Vari, Athens 16672, Greece.; Division of Basic Sciences, University of Crete Medical School, Voutes, Heraklion 71110, Greece., Richardson L; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Fellows Yates JA; Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Pl. 6, Leipzig 04103, Germany., Lundin D; Centre for Ecology and Evolution in Microbial Model Systems-EEMiS, Linnaeus University, Universitetsplatsen 1, Kalmar SE-39182, Sweden.; Department of Biochemistry and Biophysics, Stockholm University, Svante Arrhenius väg 16C, Stockholm SE-10691, Sweden., Buluç A; Applied Mathematics and Computational Research Division (AMCR), Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.; Department of Electrical Engineering and Computer Sciences, University of California, 253 Cory Hall, Berkeley, CA 94720, USA., Kyrpides NC; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA., Georgakopoulos-Soares I; Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Paediatric Research Institute, 1400 Barbara Jordan Blvd., Austin, TX 78723, USA.; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, 500 University Dr., Hershey PA 17033, USA., Pavlopoulos GA; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', 34 Fleming Street, Vari, Athens 16672, Greece.; Department of Computational Biology, Mohamed bin Zayed University of Artificial Intelligence (MBZUAI), Building 1B, Masdar City, Abu Dhabi SE45 05, United Arab Emirates., Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Corporate Authors: nf-core community
Source: GigaScience [Gigascience] 2026 Jan 21; Vol. 15.
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN: 2047-217X (Electronic) Linking ISSN: 2047217X NLM ISO Abbreviation: Gigascience Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Karatzas+E%22">Karatzas E</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Beracochea+M%22">Beracochea M</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Baltoumas+FA%22">Baltoumas FA</searchLink>; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', 34 Fleming Street, Vari, Athens 16672, Greece.<br /><searchLink fieldCode="AU" term="%22Aplakidou+E%22">Aplakidou E</searchLink>; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', 34 Fleming Street, Vari, Athens 16672, Greece.; Division of Basic Sciences, University of Crete Medical School, Voutes, Heraklion 71110, Greece.<br /><searchLink fieldCode="AU" term="%22Richardson+L%22">Richardson L</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Fellows+Yates+JA%22">Fellows Yates JA</searchLink>; Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Pl. 6, Leipzig 04103, Germany.<br /><searchLink fieldCode="AU" term="%22Lundin+D%22">Lundin D</searchLink>; Centre for Ecology and Evolution in Microbial Model Systems-EEMiS, Linnaeus University, Universitetsplatsen 1, Kalmar SE-39182, Sweden.; Department of Biochemistry and Biophysics, Stockholm University, Svante Arrhenius väg 16C, Stockholm SE-10691, Sweden.<br /><searchLink fieldCode="AU" term="%22Buluç+A%22">Buluç A</searchLink>; Applied Mathematics and Computational Research Division (AMCR), Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.; Department of Electrical Engineering and Computer Sciences, University of California, 253 Cory Hall, Berkeley, CA 94720, USA.<br /><searchLink fieldCode="AU" term="%22Kyrpides+NC%22">Kyrpides NC</searchLink>; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.<br /><searchLink fieldCode="AU" term="%22Georgakopoulos-Soares+I%22">Georgakopoulos-Soares I</searchLink>; Division of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, Dell Paediatric Research Institute, 1400 Barbara Jordan Blvd., Austin, TX 78723, USA.; Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology, The Pennsylvania State University College of Medicine, 500 University Dr., Hershey PA 17033, USA.<br /><searchLink fieldCode="AU" term="%22Pavlopoulos+GA%22">Pavlopoulos GA</searchLink>; Institute for Fundamental Biomedical Research, BSRC 'Alexander Fleming', 34 Fleming Street, Vari, Athens 16672, Greece.; Department of Computational Biology, Mohamed bin Zayed University of Artificial Intelligence (MBZUAI), Building 1B, Masdar City, Abu Dhabi SE45 05, United Arab Emirates.<br /><searchLink fieldCode="AU" term="%22Finn+RD%22">Finn RD</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
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              Text: 2026 Jan 21
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