From FAIR to CURE: guidelines for computational models of biological systems.
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| Title: | From FAIR to CURE: guidelines for computational models of biological systems. |
|---|---|
| Authors: | Sauro HM; Department of Bioengineering, University of Washington, Seattle, WA, USA. hsauro@uw.edu.; eScience Institute, University of Washington, Seattle, WA, USA. hsauro@uw.edu., Agmon E; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Blinov ML; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Gennari JH; Department of Biomedical Informatics & Medical Education, University of Washington, Seattle, WA, USA., Hellerstein JL; Department of Bioengineering, University of Washington, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA., Heydarabadipour A; Department of Bioengineering, University of Washington, Seattle, WA, USA., Jardine BE; Department of Bioengineering, University of Washington, Seattle, WA, USA., May E; Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA., Nickerson DP; Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand., Smith LP; Department of Bioengineering, University of Washington, Seattle, WA, USA., Bader GD; The Donnelly Centre, University of Toronto, Toronto, ON, Canada., Bergmann FT; BioQUANT, Heidelberg University, Heidelberg, Germany., Boyle PM; Department of Bioengineering, University of Washington, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA.; Center for Cardiovascular Biology, University of Washington, Seattle, WA, USA.; Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA., Dräger A; Martin Luther University Halle-Wittenberg, Data Analytics and Bioinformatics, Halle, Germany., Faeder JR; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA., Feng S; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA., Freire J; Department of Computer Science and Center for Data Science, New York University, New York, NY, USA., Fröhlich F; Dynamics of Living Systems Laboratory, The Francis Crick Institute, London, UK., Glazier JA; Intelligent Systems Engineering and Biocomplexity Institute, Indiana University, Bloomington, IN, USA., Gorochowski TE; School of Biological Sciences, University of Bristol, Bristol, UK., Helikar T; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA., Hermjakob H; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, UK., Hoops S; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA., Hunter P; Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand., Imoukhuede PI; Department of Bioengineering, University of Washington, Seattle, WA, USA., Keating SM; Advanced Research Computing Centre, University College London, London, UK., König M; Faculty of Life Science, Institute for Biology, Systems Medicine of Liver, Humboldt-University Berlin, Berlin, Germany., Laubenbacher R; Department of Medicine, University of Florida, Gainesville, FL, USA., Loew LM; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Lopez CF; Multiscale Modeling Group, Altos Labs, Redwood City, CA, USA., Lytton WW; Department of Bioengineering, University of Washington, Seattle, WA, USA.; Departments of Physiology & Pharmacology, Neurology, Downstate Health Science University, Brooklyn, NY, USA.; Department of Neurology, Kings County Hospital, Brooklyn, NY, USA., Malik-Sheriff RS; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, UK., McCulloch A; Departments of Bioengineering and Medicine, University of California San Diego, La Jolla, CA, USA., Mendes P; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Mulugeta L; InSilico Labs LLC, Houston, TX, USA.; Medalist Performance, Houston, TX, USA., Myers CJ; Department of Electrical, Computer, and Energy Engineering, University of Colorado Boulder, Boulder, CO, USA., Myers JG Jr; NASA - Glenn Research Center, Cleveland, OH, USA., Niarakis A; Molecular, Cellular and Developmental Biology Unit (MCD), Center of Integrative Biology, University of Toulouse III-Paul Sabatier, Toulouse, France.; Lifeware Group, Inria, Palaiseau, France., Niekerk DDV; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa., Olivier BG; Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam, Netherlands., Patrie AA; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Quardokus EM; Intelligent Systems Engineering and Biocomplexity Institute, Indiana University, Bloomington, IN, USA., Radde N; Institute for Stochastics and Applications, University of Stuttgart, Germany, Germany. nicole.radde@simtech.uni-stuttgart.de., Rohwer JM; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa., Sahle S; BioQUANT, Heidelberg University, Heidelberg, Germany., Schaff JC; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Schreiber F; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.; Faculty of Information Technology, Monash University, Melbourne, VIC, Australia., Sego TJ; Department of Medicine, University of Florida, Gainesville, FL, USA., Shin J; Department of Bioengineering, University of Washington, Seattle, WA, USA., Snoep JL; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa., Vadigepalli R; Department of Pathology and Genomic Medicine, Thomas Jefferson University, Philadelphia, PA, USA., Wiley HS; Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA., Waltemath D; Medical Informatics Laboratory, University Medicine Greifswald, Greifswald, Germany., Moraru II; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA. moraru@uchc.edu. |
| Source: | NPJ systems biology and applications [NPJ Syst Biol Appl] 2026 Mar 27; Vol. 12 (1). Date of Electronic Publication: 2026 Mar 27. |
| Publication Type: | Journal Article; Review |
| Journal Info: | Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7189 (Electronic) Linking ISSN: 20567189 NLM ISO Abbreviation: NPJ Syst Biol Appl Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 41888157 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: From FAIR to CURE: guidelines for computational models of biological systems. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Sauro+HM%22">Sauro HM</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA. hsauro@uw.edu.; eScience Institute, University of Washington, Seattle, WA, USA. hsauro@uw.edu.<br /><searchLink fieldCode="AU" term="%22Agmon+E%22">Agmon E</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Blinov+ML%22">Blinov ML</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Gennari+JH%22">Gennari JH</searchLink>; Department of Biomedical Informatics & Medical Education, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Hellerstein+JL%22">Hellerstein JL</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Heydarabadipour+A%22">Heydarabadipour A</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Jardine+BE%22">Jardine BE</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22May+E%22">May E</searchLink>; Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Nickerson+DP%22">Nickerson DP</searchLink>; Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.<br /><searchLink fieldCode="AU" term="%22Smith+LP%22">Smith LP</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Bader+GD%22">Bader GD</searchLink>; The Donnelly Centre, University of Toronto, Toronto, ON, Canada.<br /><searchLink fieldCode="AU" term="%22Bergmann+FT%22">Bergmann FT</searchLink>; BioQUANT, Heidelberg University, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Boyle+PM%22">Boyle PM</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA.; Center for Cardiovascular Biology, University of Washington, Seattle, WA, USA.; Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Dräger+A%22">Dräger A</searchLink>; Martin Luther University Halle-Wittenberg, Data Analytics and Bioinformatics, Halle, Germany.<br /><searchLink fieldCode="AU" term="%22Faeder+JR%22">Faeder JR</searchLink>; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA.<br /><searchLink fieldCode="AU" term="%22Feng+S%22">Feng S</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Freire+J%22">Freire J</searchLink>; Department of Computer Science and Center for Data Science, New York University, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Fröhlich+F%22">Fröhlich F</searchLink>; Dynamics of Living Systems Laboratory, The Francis Crick Institute, London, UK.<br /><searchLink fieldCode="AU" term="%22Glazier+JA%22">Glazier JA</searchLink>; Intelligent Systems Engineering and Biocomplexity Institute, Indiana University, Bloomington, IN, USA.<br /><searchLink fieldCode="AU" term="%22Gorochowski+TE%22">Gorochowski TE</searchLink>; School of Biological Sciences, University of Bristol, Bristol, UK.<br /><searchLink fieldCode="AU" term="%22Helikar+T%22">Helikar T</searchLink>; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.<br /><searchLink fieldCode="AU" term="%22Hermjakob+H%22">Hermjakob H</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, UK.<br /><searchLink fieldCode="AU" term="%22Hoops+S%22">Hoops S</searchLink>; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.<br /><searchLink fieldCode="AU" term="%22Hunter+P%22">Hunter P</searchLink>; Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.<br /><searchLink fieldCode="AU" term="%22Imoukhuede+PI%22">Imoukhuede PI</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Keating+SM%22">Keating SM</searchLink>; Advanced Research Computing Centre, University College London, London, UK.<br /><searchLink fieldCode="AU" term="%22König+M%22">König M</searchLink>; Faculty of Life Science, Institute for Biology, Systems Medicine of Liver, Humboldt-University Berlin, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Laubenbacher+R%22">Laubenbacher R</searchLink>; Department of Medicine, University of Florida, Gainesville, FL, USA.<br /><searchLink fieldCode="AU" term="%22Loew+LM%22">Loew LM</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Lopez+CF%22">Lopez CF</searchLink>; Multiscale Modeling Group, Altos Labs, Redwood City, CA, USA.<br /><searchLink fieldCode="AU" term="%22Lytton+WW%22">Lytton WW</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.; Departments of Physiology & Pharmacology, Neurology, Downstate Health Science University, Brooklyn, NY, USA.; Department of Neurology, Kings County Hospital, Brooklyn, NY, USA.<br /><searchLink fieldCode="AU" term="%22Malik-Sheriff+RS%22">Malik-Sheriff RS</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, UK.<br /><searchLink fieldCode="AU" term="%22McCulloch+A%22">McCulloch A</searchLink>; Departments of Bioengineering and Medicine, University of California San Diego, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mendes+P%22">Mendes P</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Mulugeta+L%22">Mulugeta L</searchLink>; InSilico Labs LLC, Houston, TX, USA.; Medalist Performance, Houston, TX, USA.<br /><searchLink fieldCode="AU" term="%22Myers+CJ%22">Myers CJ</searchLink>; Department of Electrical, Computer, and Energy Engineering, University of Colorado Boulder, Boulder, CO, USA.<br /><searchLink fieldCode="AU" term="%22Myers+JG+Jr%22">Myers JG Jr</searchLink>; NASA - Glenn Research Center, Cleveland, OH, USA.<br /><searchLink fieldCode="AU" term="%22Niarakis+A%22">Niarakis A</searchLink>; Molecular, Cellular and Developmental Biology Unit (MCD), Center of Integrative Biology, University of Toulouse III-Paul Sabatier, Toulouse, France.; Lifeware Group, Inria, Palaiseau, France.<br /><searchLink fieldCode="AU" term="%22Niekerk+DDV%22">Niekerk DDV</searchLink>; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa.<br /><searchLink fieldCode="AU" term="%22Olivier+BG%22">Olivier BG</searchLink>; Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam, Netherlands.<br /><searchLink fieldCode="AU" term="%22Patrie+AA%22">Patrie AA</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Quardokus+EM%22">Quardokus EM</searchLink>; Intelligent Systems Engineering and Biocomplexity Institute, Indiana University, Bloomington, IN, USA.<br /><searchLink fieldCode="AU" term="%22Radde+N%22">Radde N</searchLink>; Institute for Stochastics and Applications, University of Stuttgart, Germany, Germany. nicole.radde@simtech.uni-stuttgart.de.<br /><searchLink fieldCode="AU" term="%22Rohwer+JM%22">Rohwer JM</searchLink>; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa.<br /><searchLink fieldCode="AU" term="%22Sahle+S%22">Sahle S</searchLink>; BioQUANT, Heidelberg University, Heidelberg, Germany.<br /><searchLink fieldCode="AU" term="%22Schaff+JC%22">Schaff JC</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA.<br /><searchLink fieldCode="AU" term="%22Schreiber+F%22">Schreiber F</searchLink>; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.; Faculty of Information Technology, Monash University, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Sego+TJ%22">Sego TJ</searchLink>; Department of Medicine, University of Florida, Gainesville, FL, USA.<br /><searchLink fieldCode="AU" term="%22Shin+J%22">Shin J</searchLink>; Department of Bioengineering, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Snoep+JL%22">Snoep JL</searchLink>; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa.<br /><searchLink fieldCode="AU" term="%22Vadigepalli+R%22">Vadigepalli R</searchLink>; Department of Pathology and Genomic Medicine, Thomas Jefferson University, Philadelphia, PA, USA.<br /><searchLink fieldCode="AU" term="%22Wiley+HS%22">Wiley HS</searchLink>; Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Waltemath+D%22">Waltemath D</searchLink>; Medical Informatics Laboratory, University Medicine Greifswald, Greifswald, Germany.<br /><searchLink fieldCode="AU" term="%22Moraru+II%22">Moraru II</searchLink>; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA. moraru@uchc.edu. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22101677786%22">NPJ systems biology and applications</searchLink> [NPJ Syst Biol Appl] 2026 Mar 27; Vol. 12 (1). <i>Date of Electronic Publication: </i>2026 Mar 27. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article; Review – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Nature+Publishing+Group+in+partnership+with+SBI%2C+The+Systems+Biology+Institute%22">Nature Publishing Group in partnership with SBI, The Systems Biology Institute </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>101677786 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>2056-7189 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2220567189%22">20567189 </searchLink><i>NLM ISO Abbreviation: </i>NPJ Syst Biol Appl <i>Subsets: </i>MEDLINE |
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