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Duplex-Indel: a Snakemake pipeline for somatic Indel calling in Tn5 transposase-based duplex sequencing data.

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Title: Duplex-Indel: a Snakemake pipeline for somatic Indel calling in Tn5 transposase-based duplex sequencing data.
Authors: Dong G; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States.; Bioinformatics and Integrative Genomics Program, Harvard Medical School, Boston, MA 02115, United States., Hilal N; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States., Mallett S; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States., Jin B; Division of Neuropathology, Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, United States., Mao S; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States.; Program in Biological and Biomedical Sciences, Harvard Medical School, Boston, MA 02115, United States., Manam MD; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States., Shao DD; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States.; Department of Neurology, Boston Children's Hospital, Boston, MA 02115, United States., Choudhury S; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, United States., Huang AY; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, United States., Lee EA; Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, United States.; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, United States.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, United States.
Source: Bioinformatics (Oxford, England) [Bioinformatics] 2026 May 03; Vol. 42 (5).
Publication Type: Journal Article
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Duplex-Indel: a Snakemake pipeline for somatic Indel calling in Tn5 transposase-based duplex sequencing data.
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        Value: 10.1093/bioinformatics/btag205
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        Text: English
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      – TitleFull: Duplex-Indel: a Snakemake pipeline for somatic Indel calling in Tn5 transposase-based duplex sequencing data.
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              Text: 2026 May 03
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              Y: 2026
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