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Continental-scale genomic surveillance of Plasmodium falciparum malaria across sub-Saharan Africa with rapid nanopore sequencing.

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Title: Continental-scale genomic surveillance of Plasmodium falciparum malaria across sub-Saharan Africa with rapid nanopore sequencing.
Authors: Mwenda M; PATH, Lusaka, Zambia., Mosler K; Max Planck Institute for Infection Biology, Berlin, Germany., Bohmeier B; Max Planck Institute for Infection Biology, Berlin, Germany., Chomba M; Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya., van Loon W; Charité - Universitaetsmedizin Berlin, Charité Center for Global Health, Institute of International Health, Berlin, Germany., Mambwe B; PATH, Lusaka, Zambia., Gaye A; Centre International de recherche, de Formation en Genomique Appliquee et de Surveillance Sanitaire (CIGASS), Dakar, Senegal., Olorunfemi A; Center for Emerging and Re-emerging Infectious Diseases, Ladoke Akintola University of Technology, Ogbomoso, Nigeria., Suliman S; Center for Emerging and Re-emerging Infectious Diseases, Ladoke Akintola University of Technology, Ogbomoso, Nigeria., Yanogo NJ; Department of Biomedical and Public Health, Health Sciences Research Institute (IRSS), National Center for Scientific and Technological Research (CNRST), Ouagadougou, Burkina Faso., Sow D; Centre International de recherche, de Formation en Genomique Appliquee et de Surveillance Sanitaire (CIGASS), Dakar, Senegal., Ngom B; Centre International de recherche, de Formation en Genomique Appliquee et de Surveillance Sanitaire (CIGASS), Dakar, Senegal., Zoure OAZ; Department of Biomedical and Public Health, Health Sciences Research Institute (IRSS), National Center for Scientific and Technological Research (CNRST), Ouagadougou, Burkina Faso., Tibiri YNG; Department of Biomedical and Public Health, Health Sciences Research Institute (IRSS), National Center for Scientific and Technological Research (CNRST), Ouagadougou, Burkina Faso., Ojeniyi F; Center for Emerging and Re-emerging Infectious Diseases, Ladoke Akintola University of Technology, Ogbomoso, Nigeria., Zongo A; Unit for Public Health Laboratory Support, Centre for International Health Protection (ZIG), Robert Koch Institute, Berlin, Germany., Anoh EA; Centre Hospitalier et Universitaire de Bouaké, Bouaké, Côte d'Ivoire., Achi V; Centre Hospitalier et Universitaire de Bouaké, Bouaké, Côte d'Ivoire., Chiyesu C; PATH, Lusaka, Zambia., Otieno S; Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya., Ogola B; Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya., Niangaly M; Max Planck Institute for Infection Biology, Berlin, Germany.; Parasites and Microbes Research and Training Center (MRTC), University of Science, Techniques and Technologies (USTTB), Bamako, Mali., Carrasquilla M; Max Planck Institute for Infection Biology, Berlin, Germany., Goboto DK; Hirsch Institute of Tropical Medicine, Asella, Ethiopia.; College of Health Sciences, Arsi University, Asella, Ethiopia., Feldt T; Hirsch Institute of Tropical Medicine, Asella, Ethiopia.; Department of Gastroenterology, Hepatology and Infectious Diseases, University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany., Tufa TB; Hirsch Institute of Tropical Medicine, Asella, Ethiopia.; College of Health Sciences, Arsi University, Asella, Ethiopia.; Department of Gastroenterology, Hepatology and Infectious Diseases, University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany., Oliveira R; Charité - Universitaetsmedizin Berlin, Charité Center for Global Health, Institute of International Health, Berlin, Germany., Schallenberg E; Charité - Universitaetsmedizin Berlin, Charité Center for Global Health, Institute of International Health, Berlin, Germany., Sogoba Y; Parasites and Microbes Research and Training Center (MRTC), University of Science, Techniques and Technologies (USTTB), Bamako, Mali., Ntalla C; Max Planck Institute for Infection Biology, Berlin, Germany., Ouedraogo O; Department of Biomedical and Public Health, Health Sciences Research Institute (IRSS), National Center for Scientific and Technological Research (CNRST), Ouagadougou, Burkina Faso., Otieno K; Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya., Opaleye O; Center for Emerging and Re-emerging Infectious Diseases, Ladoke Akintola University of Technology, Ogbomoso, Nigeria.; Department of Medical Microbiology and Parasitology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria., Olowe A; Center for Emerging and Re-emerging Infectious Diseases, Ladoke Akintola University of Technology, Ogbomoso, Nigeria.; Department of Medical Microbiology and Parasitology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria., Gibbons M; PATH, Lusaka, Zambia., Drakeley C; PATH, Lusaka, Zambia., Schubert G; Unit for Public Health Laboratory Support, Centre for International Health Protection (ZIG), Robert Koch Institute, Berlin, Germany., Mockenhaupt FP; Charité - Universitaetsmedizin Berlin, Charité Center for Global Health, Institute of International Health, Berlin, Germany., Portugal S; Max Planck Institute for Infection Biology, Berlin, Germany., Deme AB; Centre International de recherche, de Formation en Genomique Appliquee et de Surveillance Sanitaire (CIGASS), Dakar, Senegal., Soulama I; Department of Biomedical and Public Health, Health Sciences Research Institute (IRSS), National Center for Scientific and Technological Research (CNRST), Ouagadougou, Burkina Faso., Ndiaye D; Centre International de recherche, de Formation en Genomique Appliquee et de Surveillance Sanitaire (CIGASS), Dakar, Senegal., Ojurongbe O; Center for Emerging and Re-emerging Infectious Diseases, Ladoke Akintola University of Technology, Ogbomoso, Nigeria.; Department of Medical Microbiology and Parasitology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria., Kariuki S; Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya., Shi YP; Division of Parasitic Diseases and Malaria, National Center for Emerging and Zoonotic Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA., Schultz JS; Division of Parasitic Diseases and Malaria, National Center for Emerging and Zoonotic Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA., Hawela M; National Malaria Elimination Centre, Chainama, Lusaka, Zambia., Bridges DJ; PATH, Lusaka, Zambia., Hendry JA; Max Planck Institute for Infection Biology, Berlin, Germany. hendry@mpiib-berlin.mpg.de.
Source: Nature communications [Nat Commun] 2026 May 11; Vol. 17 (1). Date of Electronic Publication: 2026 May 11.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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  Data: Continental-scale genomic surveillance of Plasmodium falciparum malaria across sub-Saharan Africa with rapid nanopore sequencing.
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